PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca19110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 19921.5 Da PI: 7.3424 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 81.2 | 3.2e-25 | 24 | 135 | 3 | 99 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas........qllaaeshldeslkee...........lleelkveeenl 82 s s+q+Cyv+C+fC+t+lavsvPs++lfk+vtvrCGhC +l s n+ ka + +++l++ llee ++++ nl Dca19110.1 24 QLSPSDQLCYVHCTFCDTVLAVSVPSSCLFKTVTVRCGHCGNLWSANMLKALllpsppptPPSPLSNNLQH----LppsnffssphnLLEEIRNTTPNL 118 56789****************************************99988873333332211122222222....134557776666666666666666 PP YABBY 83 ksnvekeesastsvsse 99 +n+ ++++++ +s+ Dca19110.1 119 MMNNNNNNNHQGMMSNC 135 66655555554444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.4E-25 | 27 | 126 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSSSSSSTTT GSVGGPGFDT PDHQLSPSDQ LCYVHCTFCD TVLAVSVPSS CLFKTVTVRC 60 GHCGNLWSAN MLKALLLPSP PPTPPSPLSN NLQHLPPSNF FSSPHNLLEE IRNTTPNLMM 120 NNNNNNNHQG MMSNCNNNNE QGGGGGGGGM MMPMRGMEHH HQFHPFHHDI PKPPPVNRRM 180 FLY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009375773.1 | 1e-36 | PREDICTED: axial regulator YABBY 1 isoform X2 | ||||
Swissprot | Q9XFB1 | 7e-24 | YAB3_ARATH; Axial regulator YABBY 3 | ||||
TrEMBL | A0A498JHG4 | 1e-34 | A0A498JHG4_MALDO; Uncharacterized protein | ||||
STRING | XP_010692186.1 | 7e-35 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 9e-21 | YABBY family protein |
Publications ? help Back to Top | |||
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