PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca18854.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family RAV
Protein Properties Length: 362aa    MW: 39886.2 Da    PI: 9.2037
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca18854.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.5e-1377125155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+ ++ a+++++g
  Dca18854.1  77 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARSYDVAAQRFRG 125
                 89****9888.8*********3.....5**********99*************98 PP
2B394.95.5e-30215325195
                 EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                 f+kv tpsdv+k++rlv+pk++ae+h                 +++ +++ l +ed + ++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+
  Dca18854.1 215 FEKVVTPSDVGKLNRLVIPKQHAEKHfplhgnnsssgtcsssLSPSSKGVLLNFEDVNEKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQ 313
                 99***************************988887777777644445999************************************************* PP

                 E-SSSEE..EEE CS
          B3  84 ldgrsefelvvk 95 
                 ++   +++l++ 
  Dca18854.1 314 RSTGLDRQLYID 325
                 775555556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-1677133IPR016177DNA-binding domain
PfamPF008472.1E-877125IPR001471AP2/ERF domain
CDDcd000185.42E-2677132No hitNo description
PROSITE profilePS5103220.15278133IPR001471AP2/ERF domain
SMARTSM003802.6E-2978139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-2078133IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.3E-39208332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-29213328IPR015300DNA-binding pseudobarrel domain
CDDcd100176.31E-27214315No hitNo description
PROSITE profilePS5086312.703215330IPR003340B3 DNA binding domain
SMARTSM010193.4E-25215330IPR003340B3 DNA binding domain
PfamPF023621.5E-27215327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MESSSIDNET SSTSESLSTI PLLTSNFNTI TNNNVVPHAS SVKASITGGL YRMGSGTSVV  60
IDSDNGVETE SRKLPSSKYK GVVPQPNGRW GAQIYEKHQR VWLGTFNEED EAARSYDVAA  120
QRFRGRDAVT NFKPLSTEDE AAVAELEFLN SKSKAEVVDM LRKHTYHDEL LQSRRNLKAS  180
RSGLGNRNMT SSDINNNNNN VGGCRQGMTS RDQLFEKVVT PSDVGKLNRL VIPKQHAEKH  240
FPLHGNNSSS GTCSSSLSPS SKGVLLNFED VNEKVWRFRY SYWNSSQSYV LTKGWSRFVK  300
EKNLKAGDIV SFQRSTGLDR QLYIDWKPRS GTVSNGSGSG SGVEVLGQVV ESPVEVGPAQ  360
MF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5821234211130DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845494.11e-157AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-140RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A0K9QUD71e-155A0A0K9QUD7_SPIOL; Uncharacterized protein
STRINGXP_010681667.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-137related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]