PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca18808.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRF
Protein Properties Length: 340aa    MW: 37904.8 Da    PI: 8.2645
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca18808.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.81.9e-23114158145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRC + v++++k+CE+H+hrgr+rsrk +e+
  Dca18808.1 114 DPEPGRCRRTDGKKWRCYQSVVSNEKYCEKHMHRGRKRSRKLVED 158
                 79***************************************9986 PP
2WRC407.1e-13231267440
         WRC   4 pgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                 + rC+R DG+kW C +++l g+k+C  H+hrg  ++ 
  Dca18808.1 231 SKRCSRKDGRKWLCHSEALLGHKYCTQHIHRGVRKQH 267
                 57******************************87765 PP
3QLQ35.62.9e-1366100337
         QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 +T +Ql +++ Q+ +yKyL+ ++P+P +Ll ++++
  Dca18808.1  66 LTQEQLKEFELQLIIYKYLVLGLPLPFHLLIPLWA 100
                 799*****************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-564100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.05265100IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.6E-86699IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.924114158IPR014977WRC domain
PfamPF088791.3E-19115157IPR014977WRC domain
PROSITE profilePS5166715.826228274IPR014977WRC domain
PfamPF088794.1E-11232267IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEGKMQKPED KSQPLISLCL GIGEGCSTTT TSDDDNKCQK HRNLKGEVDD HVVESVGCRN  60
SSVVCLTQEQ LKEFELQLII YKYLVLGLPL PFHLLIPLWA GSHSRGTNHQ DTMDPEPGRC  120
RRTDGKKWRC YQSVVSNEKY CEKHMHRGRK RSRKLVEDVA AHNPNANDGL SKNTDSIPAI  180
LTERSQLPAV EAPGLTLIDT AARIGEKMER NVEGHKCSNF QRHTNIQQQV SKRCSRKDGR  240
KWLCHSEALL GHKYCTQHIH RGVRKQHPAI SLQSSAPKPA KTDAGLGTDL NISLLDSRPP  300
DDNREITTSA CSSSDASTET TISDDSAYIS NMITVSPKMQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154GRKRSRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-24growth-regulating factor 7