PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca18536.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 307aa    MW: 34332.9 Da    PI: 5.0134
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca18536.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed++l+  ++++G  +W++ ++  g+ R++k+c++rw +yl
       Dca18536.1 16 KGPWSQAEDLKLISFIQKHGHSNWRALPKLAGLARCGKSCRLRWVNYL 63
                     79********************************************97 PP
2Myb_DNA-binding51.52.4e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T +E+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
       Dca18536.1  69 RGDFTLQEEEAIIKLHQELGNK-WSKIASKFP-GRTDNEIKNVWNTHL 114
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.0621163IPR017930Myb domain
SuperFamilySSF466895.5E-3013110IPR009057Homeodomain-like
SMARTSM007178.2E-121565IPR001005SANT/Myb domain
PfamPF002491.8E-141663IPR001005SANT/Myb domain
CDDcd001671.71E-91863No hitNo description
PROSITE profilePS5129424.77164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2667119IPR009057Homeodomain-like
SMARTSM007171.1E-1468116IPR001005SANT/Myb domain
PfamPF002497.6E-1569114IPR001005SANT/Myb domain
CDDcd001672.53E-1072114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGKGRRPCCD KAGVKKGPWS QAEDLKLISF IQKHGHSNWR ALPKLAGLAR CGKSCRLRWV  60
NYLRPDLKRG DFTLQEEEAI IKLHQELGNK WSKIASKFPG RTDNEIKNVW NTHLKKRLKA  120
KESNKDSSES CNKQSTSTST DKSLDKNNKD NSEQNLIHQS SSTDDTAEHS SSSSTTSYTS  180
QPPFPDLEME DFGPIFDNLV VHDPAMVENV SSLNELIEIP FEPNIDLCDL LEGYQSNSAD  240
LSDVNFSEID NALQAGPEMD KSSNDVVNKG EDGGSWWWLV YLENELGLDH NEATSPTQQS  300
NTSIQGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25161184105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25161184105C-Myb DNA-Binding Domain
1msf_C2e-25161184105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021760419.11e-111transcription factor MYB63-like
TrEMBLA0A0K9QIB31e-94A0A0K9QIB3_SPIOL; Uncharacterized protein
STRINGXP_010684846.11e-108(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.15e-71myb domain protein 58