PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca17458.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 335aa    MW: 37088.9 Da    PI: 8.8836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca17458.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55e-21142191255
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a+++a+++++g
  Dca17458.1 142 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAESAARAYDEAALRFRG 191
                 8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-33141200IPR001471AP2/ERF domain
PfamPF008471.3E-14142191IPR001471AP2/ERF domain
SMARTSM003803.4E-38142205IPR001471AP2/ERF domain
CDDcd000182.48E-36142201No hitNo description
PROSITE profilePS5103225.58142199IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23142200IPR016177DNA-binding domain
PRINTSPR003676.4E-12143154IPR001471AP2/ERF domain
PRINTSPR003676.4E-12165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSEIVSALSQ VVSGETRTLC SSSSSGFGVK RSYGEYEKGD DDFGTSLFGG QASNNNNNDI  60
IDMFRNVTHV SSSYSSLAFK DRPSHGISIA TSTTSMPTTI VGPTYSRVLE PQATKQQQQQ  120
QQQQQQQQQQ QQQQQQPPTR RKYRGVRQRP WGKWAAEIRD PFKAARVWLG TFDTAESAAR  180
AYDEAALRFR GSKAKLNFPE NVTLQNVPRP IPVTAHFPTS NSATTLLTPP PTVPTLVPNP  240
QLDPFQGSHD YKDYVNYSRL ITTQIDDNHG DLGLLDQMWM TSLNSPTQNL PLNSSVSTST  300
SSILASSQLT DPTAEILPRG SQHNLEGHKN KRNES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-25141202163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-28related to AP2 6