PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca17075.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 262aa    MW: 29838.7 Da    PI: 5.8538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca17075.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-125597754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+ YI +L
  Dca17075.1 55 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAITYIEEL 97
                57*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4914897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.06E-1251102No hitNo description
SuperFamilySSF474591.44E-1653122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1554111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-1454103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-95597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDEFGEVEYQ LYWETNMFLR NQELDSWGFD ETISTYYDSS SPDGIASPPG SKNIVSERNR  60
RKKLNERLFA LRAVVPNISK MDKASIIKDA ITYIEELREQ ERAIKAEISE IMYYRSQNSS  120
PCSIHQELPS VLTSPNKKKR LDTYNNNNNT LINGDASKHS FDYNNAAASC STSSSSSTID  180
DLEMRVSYVG ERTVVVSLTC NKKEGSLVKL CEIFESLKLQ IITAHITSFA GRLLKTLFIE  240
ANEREKDQLR IKIETAMTIT RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-145398954Transcription factor MYC2
5gnj_B4e-145398954Transcription factor MYC2
5gnj_E4e-145398954Transcription factor MYC2
5gnj_F4e-145398954Transcription factor MYC2
5gnj_G4e-145398954Transcription factor MYC2
5gnj_I4e-145398954Transcription factor MYC2
5gnj_M4e-145398954Transcription factor MYC2
5gnj_N4e-145398954Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358594.25e-99transcription factor bHLH35-like
TrEMBLA0A251QTX59e-97A0A251QTX5_PRUPE; Uncharacterized protein
STRINGXP_008358594.12e-98(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-76bHLH family protein