PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16673.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 511aa    MW: 56359 Da    PI: 4.6871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16673.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-174188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lv++v+++G g+W+++ +  g+ R++k+c++rw ++l
       Dca16673.1 41 KGPWTSAEDAILVEYVTRHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 88
                     79******************************************9986 PP
2Myb_DNA-binding50.54.7e-1694137146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+ T+eE+e++v++++++G++ W++ a +++ gRt++++k++w++
       Dca16673.1  94 KGAITPEEEERIVQLHAKMGNK-WARMAVELP-GRTDNEIKNYWNT 137
                      6888******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.13688IPR017930Myb domain
SMARTSM007177.2E-144090IPR001005SANT/Myb domain
SuperFamilySSF466891.37E-2840135IPR009057Homeodomain-like
PfamPF002491.9E-144188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-234295IPR009057Homeodomain-like
CDDcd001674.23E-104388No hitNo description
PROSITE patternPS0017505665IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129424.62889143IPR017930Myb domain
SMARTSM007173.8E-1593141IPR001005SANT/Myb domain
PfamPF002495.5E-1494137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2496141IPR009057Homeodomain-like
CDDcd001673.86E-1198137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MIDMTNSSEN RKASRYRKNS PSVEETSGDE SPPSGGRLLK KGPWTSAEDA ILVEYVTRHG  60
EGNWNAVQKN SGLSRCGKSC RLRWANHLRP DLKKGAITPE EEERIVQLHA KMGNKWARMA  120
VELPGRTDNE IKNYWNTRIK RLQRAGLPIY PPDIRIQALN ETEQSDDITG DDHNSENSHT  180
NTLGIPDIEF RGLELNHGPL SCPPSLLDVS QSSLLENSVD CVFPSLNPNK RLRDVNPYAN  240
DPFPRLSSSP STVWLTTPSS VAVHGKNSSS SSEPNSKAMK MELPSFQYPT TQVLGGWATS  300
SSPLPSLESV DTLIESPESE HTHSNCPSPR SSGLLEAIVF ESQSIMKNST KQNADEASFV  360
ARDAAESSSR NISENFWDGC GGGDPISPLS QSAASGFVDY TPGSGGSSSD EPQSCEPIPE  420
YNLKPEPIDW ASPEYDDKKD ISCPLEYLRP DALLDSFWFG HRTARTTEHL ITEDVGELLE  480
DFNCEYKQAS SLPSDSNHSF GPQSSMWEDH C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-27381411103C-Myb DNA-Binding Domain
1msf_C2e-27381411103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772247.10.0transcription factor GAMYB-like
RefseqXP_021772248.10.0transcription factor GAMYB-like
SwissprotA2WW873e-86GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A0K9R2L50.0A0A0K9R2L5_SPIOL; Uncharacterized protein
STRINGXP_010673830.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.15e-80myb domain protein 81