PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca16537.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 709aa MW: 78602.9 Da PI: 5.513 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.7e-07 | 123 | 145 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C G rC+F Hgp Dca16537.1 123 VPCVFFQQ-GFCLKGTRCPFLHGP 145 69******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.521 | 35 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.075 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 3.7E-13 | 37 | 90 | No hit | No description |
SMART | SM00356 | 0.099 | 66 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.911 | 66 | 92 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.756 | 119 | 146 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 119 | 145 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 120 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 124 | 144 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.12 | 124 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MAPVIKELPE LAPPPSAAVT ATTTAAVTAV VDESLMRNTD CIYFLASPLT CKKGSECEYR 60 HCEAARNNPR DCWYWLNGNC LNSKCTFRHP PLDALAPPQA ANSVTPSPSI APSGTPVPSK 120 QAVPCVFFQQ GFCLKGTRCP FLHGPFPPTN HKIWPNPATA AATEAPTFKK SFGTPQTYTQ 180 TKTGFNSVPN VVEPIRQPQA NAAPKVVAAK QTVGGPAVKR SQPFGAVEQI PKSRETVPSP 240 IDRGSLRNRT ARVENQIHQN RRDVKDSLRE TSPGFDVLVD DKLEKDQYYH DEDEYVTMRG 300 REGRRIDEFN IGRHDHYNSV AGGDLDDYRH KHGYDSYNDL QDDYRRAHRG ASSERLTDRD 360 RRGQYKSENP GYDQNSSDLR HRLLKQRRGN DLRSVVSPDY KPNYHPDDRE YRGSRRDARS 420 PTRDRSIGSR LQGRIKLPRT SPPATDNDRG RSSGRFSPSR LPASTHQGRL RDRLGGRRQD 480 ESNESGIFRA QTRNDSTSQA NGTEFAGRKR LSELRGAGRS EGDASFDAPK PLSEILKRKR 540 KEGMTASTGV VNSDSKELKQ NENYVNSITT VADPAADTAK QAAPSSAAKQ TPADDLQENN 600 KSVVAEGGEE EAGEISNKKV KLIDDEPSLP NDDKHAEAEE GQFGGDVEEH EGDEEYDQGD 660 GEYDYEQEDD VEGYDLNEGE VDVGDVAENE DFMDEDDGDD FAKKLGVSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010680041.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A0K9QEN3 | 0.0 | A0A0K9QEN3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010680041.1 | 0.0 | (Beta vulgaris) |