PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16525.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 646aa    MW: 71089.8 Da    PI: 8.7653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16525.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-1358102149
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                 ++y+GVr +k +g++++eIrdp++   + r++lg+f+taeeA+  +   
  Dca16525.1  58 KKYPGVRLRK-WGKYASEIRDPVS---KGRIWLGTFDTAEEAYSVYNMK 102
                 59******99.**********643...48*************9887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.73E-1558119No hitNo description
Gene3DG3DSA:3.30.730.101.8E-1759108IPR001471AP2/ERF domain
SMARTSM003804.1E-1559124IPR001471AP2/ERF domain
PfamPF008472.6E-55996IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1359106IPR016177DNA-binding domain
PROSITE profilePS5103217.26659118IPR001471AP2/ERF domain
PRINTSPR003672.1E-66071IPR001471AP2/ERF domain
PRINTSPR003672.1E-68298IPR001471AP2/ERF domain
PROSITE profilePS5103211.812186248IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-8188235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-9189233IPR001471AP2/ERF domain
SMARTSM003800.009189240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-4308344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MKKFRVFCTD PEATDSSSDE DDAVSRPEKQ KRFIREVNVG GDPPEERPKN PVENPGKKKY  60
PGVRLRKWGK YASEIRDPVS KGRIWLGTFD TAEEAYSVYN MKKLEFDAYR SKMSSNLPVP  120
VNNKSNSAVD AAENVLCREK VCEFGGKNVC SEGGLGEKVV GDGETGEKLG GSGENKVEGS  180
GGIVKVRAGV EKVKSGKWVS RINYPDSSGR IWVGMFNSEE EAVSAYDRKK VEFEERFKSG  240
GGERPHFARV RCRKRKFVAL LGGNRNPKDA EKAAPEKKVL ATVEKKVVAE GDGNVDGSDV  300
VKRKLPPGVR QNGRGRWGGR ILHPERKRLI SLGNFSSPEE AGLAVAKKRD QFEKTYGYKS  360
RDDSVVADVS LGECLKDGIA ATELPCGVSK TASGRWFARA EQPRKKGTIK MGPSQTSEAA  420
VRALNKRKAE VEERCKGKDR ANADKFVNRE VVLGLTASEL SDEKDPLKEK VENFDSKGAL  480
SGEMSKDGVF PDRIRMPKSG SCGAHVTHPS NGSRKWVSSF LMTDEAVRAC DETKAILDNK  540
LASLDSEPTA AEKTPDSTTC YHSPVSVFDR ENSNNSTASG ELENVLVDAP VSSHYDSAYA  600
LANVPNFDEA VRMGIIDEYG KLQGKYSEFD KPMWYAPEDN WFLPGY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-18ERF family protein