PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca15632.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 490aa    MW: 56088.5 Da    PI: 5.3953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca15632.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS247.45.5e-76734872373
        GRAS   2 velLlecAeavss.gdlelaqalLarlsel.aspdgdpmqRlaayfteALaar..larsvselykalppsetsekn......sseelaalkl..fsevs 88 
                 ++ Ll+cA+a+++ +d + aq+lL+ l+++  s + d++qRl+  f++AL  r  l+ + + +y++ +   + +++        ++l+ l++  f++++
  Dca15632.1  73 EQFLLHCADAIENnDDPTSAQQLLCVLNNIsPSGNNDSNQRLTRAFLRALILRatLNPTYKFIYDINNDLYSLSSSshcgnyNNNKLSLLEVanFVHLT 171
                 688*********935567***********9445555*************876611555777777766433322222235555555555555588***** PP

        GRAS  89 PilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg....skeeleetgerLakfAeelg 173
                 P+++f++ + N +I++ave+          +Hi+D++i+q++Q p+L++ +++R    ++pp +R+T+ +  e++    +  ++e +g rL +fA++ g
  Dca15632.1 172 PWYRFGFTASNLMIMDAVEKYnngpsnsLIIHIVDISITQCMQIPTLIDLISTRFqppQSPPFVRLTVGVVTEHVppmfNCVSYEDVGLRLINFARSRG 270
                 *******************987777653457***********************8566779******766656668899999***************** PP

        GRAS 174 vpfefnvlvakrledl..eleeLrvkp.............gEalaVnlvlqlhrlldesv...sleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                 v +efnv++++ l+ +   +++ r ++             +E+l+Vn+++ lh+l +++    +++s+r+ +Lk +++l P++v++ve+++d +s++++
  Dca15632.1 271 VVLEFNVVHTTPLDGFasLVDQVRHQQhhggnlhypndvtQEMLVVNCQMTLHYLQQHDEfgnDITSPRSMFLKEIRNLDPDMVIIVEEDVDFTSNNLV 369
                 *******955544444222333333333333444445999***************987752225666******************************** PP

        GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse.kaakqaklllrkvksdgyrve 352
                 er+ +a++y++  fd+l++ lp+ ++er  +E+  + ++i+nv++ eg +r+er+e  ++W er+ eaGF++v ++e +aa+++k+++ +++  g+  +
  Dca15632.1 370 ERLKSAFNYFWIPFDTLDTFLPKGNKERECYEAD-ICWKIENVITYEGGQRVERQEPWRRWVERMVEAGFRTVVVGEeEAAAEVKAVVGEHG-VGWGSK 466
                 **********************************.*************************************99976268899********9.668888 PP

        GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                 +e++ lvl+Wk++++ ++SaW
  Dca15632.1 467 KEEDHLVLTWKGHNVAFASAW 487
                 99999**************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.26746468IPR005202Transcription factor GRAS
PfamPF035141.9E-7373487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MMQFTEIPTF LQPQPNSIPS YYYYYYQTTM LNKTPQTSTI PTTFATKPWH TFPTQSKFCV  60
PNNYLSGNTN CIEQFLLHCA DAIENNDDPT SAQQLLCVLN NISPSGNNDS NQRLTRAFLR  120
ALILRATLNP TYKFIYDINN DLYSLSSSSH CGNYNNNKLS LLEVANFVHL TPWYRFGFTA  180
SNLMIMDAVE KYNNGPSNSL IIHIVDISIT QCMQIPTLID LISTRFQPPQ SPPFVRLTVG  240
VVTEHVPPMF NCVSYEDVGL RLINFARSRG VVLEFNVVHT TPLDGFASLV DQVRHQQHHG  300
GNLHYPNDVT QEMLVVNCQM TLHYLQQHDE FGNDITSPRS MFLKEIRNLD PDMVIIVEED  360
VDFTSNNLVE RLKSAFNYFW IPFDTLDTFL PKGNKERECY EADICWKIEN VITYEGGQRV  420
ERQEPWRRWV ERMVEAGFRT VVVGEEEAAA EVKAVVGEHG VGWGSKKEED HLVLTWKGHN  480
VAFASAWIPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-356149076475Protein SHORT-ROOT
5b3h_B4e-356149022421Protein SHORT-ROOT
5b3h_E4e-356149022421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714437.11e-164scarecrow-like protein 32
SwissprotQ9SN221e-129SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8K9H61e-160A0A1U8K9H6_GOSHI; scarecrow-like protein 32 isoform X1
STRINGXP_010679612.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein