PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca15492.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

GRAS

Protein Properties

Length: 716aa MW: 77944.1 Da PI: 6.7062

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca15492.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	282.2	1.5e-86	354	715	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +e+L+++A+ +++g+++laq++Larl+++ p++ p+ R+a y+teAL++ l+ s+ ++ pp++ +++++++++ a+k+fsevsPi +f ++t+ Dca15492.1 354 KEQLYKAADLIQTGNFSLAQEILARLNQQlLFPAKPPLVRAALYVTEALQTLLQL--SNPVAVPPPKTLTPYDVVHKMDAYKVFSEVSPITQFVNFTCT 450 689**********************99799999**************98..55555679999999************************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrv 196 qaIlea+e ++++H+iDfdi+ G+QW++L+q+L R++g+psl iT++++p+ +++ el ++e+L +fA+ +g+ fe +v+ ++++ ++ + r Dca15492.1 451 QAILEALEDADAIHVIDFDIGCGAQWASLIQELPLRKRGAPSLHITAIAPPT-THSFELALVRENLVQFANDTGIAFELQVVNLDSFDPSlsSFPNVRS 548 **********************************************77.57899*******************966655432226677788 PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++E++aV++ + ++ +s +++L+++k+ sPk+vv ++ d+ + +F ++++++le ++ ++dsl+ + e +kvE+++++++i+ Dca15492.1 549 SENECIAVSIPIWASSTR------PSLLPSILRFIKQCSPKIVVSLDKGFDRCDVPFPQHVIHSLESCTNFMDSLDGL-NVAPEIINKVEKFFVQPRIE 640 88*****9666654......455567*****************************************654.44668899********** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 n + + ++ +W++++ ++G+ p+++s+++++qa++++++++++g++ve++++slvl W++r+Lv++SaWr Dca15492.1 641 NSMLGRLHA----PDKMPHWKNMFASSGLLPLQFSNFTETQADYVVKRTPGRGFHVEKRQASLVLSWQRRELVAASAWR 715 99887776....999*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.25	327	695	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.1E-84	354	715	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MRAMPYNLQQ GKGVVVASPN FNSFNHFVAP ENNINYNNNT KINNIIDNNN NNNNNNNNNN 60 NNCGSESVKK KKKSVKRGSS SVESEPTSAL DSVRRSPSTP TSTSTLSSSF AGVADPTTCA 120 GGVGGNGIGL EEWDSLFPNA DGALLPWIMG DPDDPGLGSG SGIKHLLQSG NNPVVEYEGN 180 AGLGVVDQVN ASVAAPPPPI SGVGGGGGGS MLSGCVPTNV FGLNPNQLFG GGGLQFAPPM 240 GDEKPQIFES RLVMNQQQQG HSFGNPSFMM SPAALGNNNY CHQQQLEQFQ PQLKRHNPGV 300 VLDPNLLQGG KNPFLDSPGH HHHEMLLRKQ HQQQQHQTHL PTGLSVMMPE QGVKEQLYKA 360 ADLIQTGNFS LAQEILARLN QQLLFPAKPP LVRAALYVTE ALQTLLQLSN PVAVPPPKTL 420 TPYDVVHKMD AYKVFSEVSP ITQFVNFTCT QAILEALEDA DAIHVIDFDI GCGAQWASLI 480 QELPLRKRGA PSLHITAIAP PTTHSFELAL VRENLVQFAN DTGIAFELQV VNLDSFDPSL 540 SSFPNVRSSE NECIAVSIPI WASSTRPSLL PSILRFIKQC SPKIVVSLDK GFDRCDVPFP 600 QHVIHSLESC TNFMDSLDGL NVAPEIINKV EKFFVQPRIE NSMLGRLHAP DKMPHWKNMF 660 ASSGLLPLQF SNFTETQADY VVKRTPGRGF HVEKRQASLV LSWQRRELVA ASAWRF

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MRAMPYNLQQ GKGVVVASPN FNSFNHFVAP ENNINYNNNT KINNIIDNNN NNNNNNNNNN  60
NNCGSESVKK KKKSVKRGSS SVESEPTSAL DSVRRSPSTP TSTSTLSSSF AGVADPTTCA  120
GGVGGNGIGL EEWDSLFPNA DGALLPWIMG DPDDPGLGSG SGIKHLLQSG NNPVVEYEGN  180
AGLGVVDQVN ASVAAPPPPI SGVGGGGGGS MLSGCVPTNV FGLNPNQLFG GGGLQFAPPM  240
GDEKPQIFES RLVMNQQQQG HSFGNPSFMM SPAALGNNNY CHQQQLEQFQ PQLKRHNPGV  300
VLDPNLLQGG KNPFLDSPGH HHHEMLLRKQ HQQQQHQTHL PTGLSVMMPE QGVKEQLYKA  360
ADLIQTGNFS LAQEILARLN QQLLFPAKPP LVRAALYVTE ALQTLLQLSN PVAVPPPKTL  420
TPYDVVHKMD AYKVFSEVSP ITQFVNFTCT QAILEALEDA DAIHVIDFDI GCGAQWASLI  480
QELPLRKRGA PSLHITAIAP PTTHSFELAL VRENLVQFAN DTGIAFELQV VNLDSFDPSL  540
SSFPNVRSSE NECIAVSIPI WASSTRPSLL PSILRFIKQC SPKIVVSLDK GFDRCDVPFP  600
QHVIHSLESC TNFMDSLDGL NVAPEIINKV EKFFVQPRIE NSMLGRLHAP DKMPHWKNMF  660
ASSGLLPLQF SNFTETQADY VVKRTPGRGF HVEKRQASLV LSWQRRELVA ASAWRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-21	359	714	25	378	Protein SCARECROW
5b3h_A	2e-21	359	714	24	377	Protein SCARECROW
5b3h_D	2e-21	359	714	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021768460.1	0.0	scarecrow-like protein 6 isoform X1
Refseq	XP_021768461.1	0.0	scarecrow-like protein 6 isoform X2
TrEMBL	A0A0K9RSB8	0.0	A0A0K9RSB8_SPIOL; Uncharacterized protein
STRING	XP_010695123.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-100	GRAS family protein