PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca15340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | GRAS | ||||||||
Protein Properties | Length: 147aa MW: 17430.2 Da PI: 10.4647 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 55.3 | 1.3e-17 | 2 | 72 | 132 | 201 |
GRAS 132 LasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 L++R+ gpp+lRiTgv+ p g +++++etg+rLa ++e++gvpfef++ +a+r+++l++e+++++++E Dca15340.1 2 LSKRRVGPPKLRITGVDYPMRGfkPAQKVQETGNRLAGYCERFGVPFEFQA-IAQRWDTLKPEDFKIEKDED 72 899****************99999***************************.7***************9996 PP | |||||||
2 | GRAS | 48.9 | 1.2e-15 | 79 | 145 | 308 | 374 |
GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ ++++W++r +++GF++v+l++++++ a+++++ + + ++ve++++++v+gWk+r L +vS+W+ Dca15340.1 79 RTLSYKQWQMRHQRVGFTQVALNQEVVQRARAMVKANYHKDFMVEQDKEWMVQGWKGRILSAVSCWK 145 556789********************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.895 | 1 | 147 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-15 | 2 | 72 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-13 | 79 | 145 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MLSKRRVGPP KLRITGVDYP MRGFKPAQKV QETGNRLAGY CERFGVPFEF QAIAQRWDTL 60 KPEDFKIEKD EDYFLKLIRT LSYKQWQMRH QRVGFTQVAL NQEVVQRARA MVKANYHKDF 120 MVEQDKEWMV QGWKGRILSA VSCWKPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021720827.1 | 4e-33 | scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 3e-22 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A151SUR0 | 1e-45 | A0A151SUR0_CAJCA; Scarecrow-like protein 14 | ||||
TrEMBL | A0A151TMC6 | 2e-45 | A0A151TMC6_CAJCA; Scarecrow-like protein 14 | ||||
TrEMBL | M0THP5 | 2e-45 | M0THP5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P15080_001 | 3e-46 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-24 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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