PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca14360.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 380aa    MW: 42962.6 Da    PI: 4.8799
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca14360.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.23.8e-31441562102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEEEESXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweFkhksF 86 
                   Fl+k+++++ed++++ ++sws+  nsf+v+d+++f++ +Lp+ Fkh+nf+SFvRQLn+Y  ++ +    + ks            +++ weF+++ F
    Dca14360.1  44 FLTKTFDMVEDPSTDAIVSWSKARNSFIVWDSHKFSTLLLPRLFKHNNFSSFVRQLNTYVLREYNIILVHGKSinldalqgfrkvDPDRWEFANEGF 140
                   9**********************************************************9999988777666666788877665449********** PP

                   XXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  87 kkgkkellekikrkks 102
                     g+k+ll++ikr+++
    Dca14360.1 141 LGGQKHLLKTIKRRRN 156
                   *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3440154IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-3040154IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-4740154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.3E-2844154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-154467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-158294IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-1595107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEAVIVKVED LVGSSSSSSS SSSSKLTLSP KPMEGLNELN TPPFLTKTFD MVEDPSTDAI  60
VSWSKARNSF IVWDSHKFST LLLPRLFKHN NFSSFVRQLN TYVLREYNII LVHGKSINLD  120
ALQGFRKVDP DRWEFANEGF LGGQKHLLKT IKRRRNVTQS SQHQGGSCVE LGQYGLDGEI  180
DRMKRDRTLL MTEIVKLRQQ QQSSRQQLVA MESRLRSTEE KQQQMMTFLA KAFVNPTFVQ  240
NLMHKKDEHL KSVKAIKAGM KRRLTSTLSA EKLEDVVAPE LDRLMAVESD IETLLSATLD  300
NGTDGDIKEQ KVDDSMPPEI DTNVGDVSQT SWEELLWAED EEGFRQDLDV PVENVVPESG  360
NWGEDVEDLI EQLGFLGPMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-234015425129Heat shock factor protein 1
5d5v_B4e-234015425129Heat shock factor protein 1
5d5v_D4e-234015425129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019103165.11e-149PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_019103167.11e-149PREDICTED: heat shock factor protein HSF30 isoform X1
SwissprotP411521e-116HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0K9S2581e-140A0A0K9S258_SPIOL; Uncharacterized protein
TrEMBLA0A0K9S3H81e-140A0A0K9S3H8_SPIOL; Uncharacterized protein
STRINGXP_010669379.11e-149(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-105heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]