PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13357.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

STAT

Protein Properties

Length: 558aa MW: 62230.5 Da PI: 5.134

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13357.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	172.9	5.1e-54	69	190	1	122
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfle 99 ldvvll+a+gqp++k+++vvasL+yad+ ++vek++d+eapLL+ +dG+efss d+p+++ +Gras+kl isqLsskc nrLf+ikfe++++++ypf e Dca13357.1 69 LDVVLLDAFGQPAHKELKVVASLIYADDRSPVEKAEDDEAPLLTICDGLEFSSIDKPSRFSQGRASLKLSISQLSSKCGNRLFCIKFEVLEMENYPFCE 167 8************************************************************************************************ PP STAT 100 avskpirCisrsrntrsssltkk 122 a++ pirCisr+ n ++++ t+k Dca13357.1 168 AFTPPIRCISRTGNGNMATITWK 190 **********99999988886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.505.10	8.4E-4	457	496	IPR000980	SH2 domain
SuperFamily	SSF55550	1.28E-5	460	514	IPR000980	SH2 domain
PROSITE profile	PS50001	9.114	463	523	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MQKEGHNLDG YAYGAEVLRS TASIINHFLK DPPLQLCIDS ASASEVEVED DGIWNIVGGK 60 VSCRKLFSLD VVLLDAFGQP AHKELKVVAS LIYADDRSPV EKAEDDEAPL LTICDGLEFS 120 SIDKPSRFSQ GRASLKLSIS QLSSKCGNRL FCIKFEVLEM ENYPFCEAFT PPIRCISRTG 180 NGNMATITWK KLPSGVHLFN GSTVPQPGVG HSEPQQKTVC EPRMNPPLKR VKFGELAPME 240 DINADTSVKQ REEECNSYIM PEKEAASATG TSLASIQENY GSMDNSTSDS ESADARNSES 300 KNVPCNIDLL SDLTIFRYCL GSSSERSAML KEISVAFPEL DISDMAEKVA IFSGCTHQRH 360 QITISKRLLE EGAKTWNMIS RGSHRVQWDD IVFDIEEQFM RIACCSTRSL TQQDLNFLRR 420 VSGANDYMTK ENFHKMWCWL YPVAFTVSRP EINALWASTS PKWIEGFVTK EEVEFSLQST 480 SGISEPGTFI IRFPTTRSWP HPDAGSLVAS YVATDFSLRH RQLSLDYSSG MFEPNRKPLK 540 ELLLSEPGLS RLGRVAMD

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MQKEGHNLDG YAYGAEVLRS TASIINHFLK DPPLQLCIDS ASASEVEVED DGIWNIVGGK  60
VSCRKLFSLD VVLLDAFGQP AHKELKVVAS LIYADDRSPV EKAEDDEAPL LTICDGLEFS  120
SIDKPSRFSQ GRASLKLSIS QLSSKCGNRL FCIKFEVLEM ENYPFCEAFT PPIRCISRTG  180
NGNMATITWK KLPSGVHLFN GSTVPQPGVG HSEPQQKTVC EPRMNPPLKR VKFGELAPME  240
DINADTSVKQ REEECNSYIM PEKEAASATG TSLASIQENY GSMDNSTSDS ESADARNSES  300
KNVPCNIDLL SDLTIFRYCL GSSSERSAML KEISVAFPEL DISDMAEKVA IFSGCTHQRH  360
QITISKRLLE EGAKTWNMIS RGSHRVQWDD IVFDIEEQFM RIACCSTRSL TQQDLNFLRR  420
VSGANDYMTK ENFHKMWCWL YPVAFTVSRP EINALWASTS PKWIEGFVTK EEVEFSLQST  480
SGISEPGTFI IRFPTTRSWP HPDAGSLVAS YVATDFSLRH RQLSLDYSSG MFEPNRKPLK  540
ELLLSEPGLS RLGRVAMD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694737.1	0.0	PREDICTED: uncharacterized protein LOC104907497
Refseq	XP_010694738.1	0.0	PREDICTED: uncharacterized protein LOC104907497
Refseq	XP_010694739.1	0.0	PREDICTED: uncharacterized protein LOC104907497
TrEMBL	A0A0J8BB72	0.0	A0A0J8BB72_BETVU; Uncharacterized protein
STRING	XP_010694737.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-147	SH2 domain protein B