PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13332.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HB-other

Protein Properties

Length: 817aa MW: 86476 Da PI: 4.599

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13332.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.6	5.7e-05	62	81	36	55
HCTS-HHHHHHHHHHHHHHH CS Homeobox 36 klgLterqVkvWFqNrRake 55 k+ ++ +qV +WFqNrR+ Dca13332.1 62 KMVVQMKQVWNWFQNRRYAL 81 667889***********965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-4	24	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.74E-7	25	84	IPR009057	Homeodomain-like
Pfam	PF16719	6.7E-39	129	256	IPR032001	SAWADEE domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MESNGELLFS FQIIPMLEGY LSGVEVAQME AILKKHEGHV PPRDLLVALA HRFSQSPERA 60 GKMVVQMKQV WNWFQNRRYA LRAKSVEPSG KPGTSPVTAP QAMNVPSVPQ QMAVSSGPHV 120 AGNTSEAPTM EYEAKSARDG AWYDVQMFIS LRSLDTENPE VLVRFAGFGP EEDEWVNIVK 180 HVRPRSLPCE ASECIVVCPG DLILCFQEGK EQALYFDAHV LDAQRRRHDV RGCRCRFLVR 240 YDHDQSEEIV PLRKICRRPD TDYRLQQLNN AANDAPAPTS APVGPSKPVV STSTTALGTT 300 NPSASAATVS QSSIIGARPS VRPPPASAPT LVQALNVRPA TTPIPTSVPT STRATSFGTS 360 TPAVRPPMSD QKKAENVNPA QISMPDQKVA SVNPAQVSVP VLKKAEVEQV PVSSPTLAES 420 VNSALVSLPV PKKAEAEQVS VFDPKMAETV NPAQISVTEP KKVEAEQVLV CIPKMAESVD 480 PAYISVTDPK KPEAEQVSVC IPKMAESVDP AHISVTDPKK AEAEQVLVHT PKIAESVNPV 540 LISAIDPKTA ENVVPVQISI PGPKMAESVS VMPTPVVVTV PEVNKVEVVS PTPVLAPLSG 600 PSKVETNSPS SAPVQVPVPV PETIKVEGDN AAVVSVTELN KVASDIPVSV CGSSQVETVI 660 PAFAPVQVPE TNEVAGDIPV YVPEPNEVVS DMSVSIPEPN KAEGDISITA ATEPNKVEGD 720 IPASAPEPNK TEGDIPVSAP AASVNLGTSD SEAGAQANIS TTGAVTKILE ANEADNINVP 780 EEQLSGNPAI TVPGPEPHPG TEPLSTVTGN TELTLGN

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MESNGELLFS FQIIPMLEGY LSGVEVAQME AILKKHEGHV PPRDLLVALA HRFSQSPERA  60
GKMVVQMKQV WNWFQNRRYA LRAKSVEPSG KPGTSPVTAP QAMNVPSVPQ QMAVSSGPHV  120
AGNTSEAPTM EYEAKSARDG AWYDVQMFIS LRSLDTENPE VLVRFAGFGP EEDEWVNIVK  180
HVRPRSLPCE ASECIVVCPG DLILCFQEGK EQALYFDAHV LDAQRRRHDV RGCRCRFLVR  240
YDHDQSEEIV PLRKICRRPD TDYRLQQLNN AANDAPAPTS APVGPSKPVV STSTTALGTT  300
NPSASAATVS QSSIIGARPS VRPPPASAPT LVQALNVRPA TTPIPTSVPT STRATSFGTS  360
TPAVRPPMSD QKKAENVNPA QISMPDQKVA SVNPAQVSVP VLKKAEVEQV PVSSPTLAES  420
VNSALVSLPV PKKAEAEQVS VFDPKMAETV NPAQISVTEP KKVEAEQVLV CIPKMAESVD  480
PAYISVTDPK KPEAEQVSVC IPKMAESVDP AHISVTDPKK AEAEQVLVHT PKIAESVNPV  540
LISAIDPKTA ENVVPVQISI PGPKMAESVS VMPTPVVVTV PEVNKVEVVS PTPVLAPLSG  600
PSKVETNSPS SAPVQVPVPV PETIKVEGDN AAVVSVTELN KVASDIPVSV CGSSQVETVI  660
PAFAPVQVPE TNEVAGDIPV YVPEPNEVVS DMSVSIPEPN KAEGDISITA ATEPNKVEGD  720
IPASAPEPNK TEGDIPVSAP AASVNLGTSD SEAGAQANIS TTGAVTKILE ANEADNINVP  780
EEQLSGNPAI TVPGPEPHPG TEPLSTVTGN TELTLGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	7e-43	130	260	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	7e-43	130	260	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	7e-43	130	260	4	134	SHH1 SAWADEE
4iur_B	7e-43	130	260	4	134	SHH1 SAWADEE
4iut_A	7e-43	130	260	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	7e-43	130	260	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	7e-43	130	260	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	7e-43	130	260	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	7e-43	130	260	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	7e-43	130	260	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-104	sequence-specific DNA binding transcription factors;sequence-specific DNA binding