PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13307.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 278aa    MW: 30477.8 Da    PI: 6.5103
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13307.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06239263125
                 --S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                 ykte Cr  +++ +C+yG rC+F H
  Dca13307.1 239 YKTEVCRMVLAGDQCPYGHRCHFRH 263
                 9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-4211233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-11234263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8235264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821238266IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5238265IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPRTTQFNGI SDIFDSPPYS SSFFDTDDND TSTSVTPVTA TSTDQSATTT VAAAVAAYSR  60
LLSQHNDLMN RLAYYMSQLK ITFKEAEALR QENTNLRVAN RELSQQIGLL LEAAAASFPE  120
SEDSAGGWKE TAENTSDSPT SVIENDSKQQ HAVEEGRVTL PKSISVRSNG YLKLSPGHVA  180
GPSGSSSEPK PKPKRSDSSK TRPLSPVSGA ETGECPYGDH CQLAQGITEL RPVIRHPRYK  240
TEVCRMVLAG DQCPYGHRCH FRHALTPEEQ LMFPRRLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-152112631466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681714.18e-77PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-46C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0K9QNV43e-73A0A0K9QNV4_SPIOL; Uncharacterized protein
STRINGXP_010681714.13e-76(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-46C3H family protein