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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Dca13203.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 150aa MW: 16859.5 Da PI: 4.1018 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 41 | 4.1e-13 | 68 | 95 | 2 | 29 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtP 29
prlrWtp+LH rFv+ave+LGG+e P
Dca13203.1 68 PRLRWTPDLHLRFVHAVERLGGQETSKP 95
8**********************98877 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 3.7E-11 | 64 | 94 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 150 aa Download sequence Send to blast |
MEGSVNQSGE CSKTNLSEQG DDEDESDEND EEMTYNNNNG GSSSNSTVDE NDEKPSTTVR 60 PYVRSKTPRL RWTPDLHLRF VHAVERLGGQ ETSKPIHGLP ITMDYCTIPT KSSYQPILLE 120 QTPMDGLDFD MIIINILDDE SSTFKDLIIK |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010092813.1 | 3e-31 | two-component response regulator ORR22 | ||||
| Refseq | XP_020552483.1 | 2e-32 | putative Myb family transcription factor At1g14600 | ||||
| Refseq | XP_022747677.1 | 3e-32 | probable transcription factor KAN4 | ||||
| TrEMBL | A0A2P5B120 | 3e-32 | A0A2P5B120_PARAD; Homeodomain-like | ||||
| STRING | XP_010092813.1 | 1e-30 | (Morus notabilis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G38300.1 | 3e-20 | G2-like family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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