PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca12933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | bHLH | ||||||||
Protein Properties | Length: 194aa MW: 21774.6 Da PI: 8.6661 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.2 | 7.1e-14 | 130 | 175 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR+ri +++ +L+el+P+ +k + a++L +Av+YIksLq Dca12933.1 130 SIAERERRNRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKSLQ 175 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.688 | 124 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.2E-16 | 126 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.27E-12 | 128 | 177 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-15 | 129 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.8E-12 | 130 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-11 | 130 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MRGIGSFRVG GGTNGESGPR SSRLGMNHLP RIAEIQNENI KETSPDEVKF RTHDSEFDSP 60 TGFASWNDSG SDASLLSQNG SLSRPPMLTH HLSLPKTSTE MATIEKLLQF QDTVPCKVRA 120 KRGFATHPRS IAERERRNRI SERMRKLQEL VPNMDKQTNT ADMLDLAVDY IKSLQDEFKV 180 LSDCRAKCRC VDLP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672727.2 | 5e-98 | PREDICTED: transcription factor bHLH130 | ||||
Swissprot | Q66GR3 | 3e-52 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A0K9QVG3 | 2e-95 | A0A0K9QVG3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672727.1 | 3e-98 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-41 | bHLH family protein |
Publications ? help Back to Top | |||
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