PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca12464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NAC | ||||||||
Protein Properties | Length: 447aa MW: 50542.9 Da PI: 6.3059 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.5 | 5.7e-32 | 125 | 265 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksgyW 83 lp+G++F+P+d el+ e+L++k+ +++ ++ e+i++++ i++++P+dLp v+++ ++++fF+k++++ya+g+rk+r+ ++ +W Dca12464.1 125 LPAGVKFDPSDVELL-EHLAAKCGRNDanshvfID--EFIPTLEmdkgICYTHPKDLP-GVSKDGNSVHFFHKTANAYASGQRKRRKiqneqnHETVRW 219 799************.99****9999966553322..23433322345**********.66778899*******************845555444889* PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+k++++ + ++g+kk++v+y + + +k++k++Wvmh+y+l Dca12464.1 220 HKTGKTKPIFD-NCVQKGCKKIMVLYrsSRKGSKPVKSNWVMHQYHL 265 ***********.8999**********4434677888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-36 | 112 | 284 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.129 | 125 | 284 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-13 | 126 | 265 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MLQLVLIVFI LWSKVDINGG ITFVVYRENG GWRRHHSGVG TDGSRSDLRE REMGFRMVEL 60 VVLGRGEQRA RRRSWVLDCR GIAKKIRHTS LPPAVQIADS GAKVECPKCH NWIGNKDVCY 120 EWPGLPAGVK FDPSDVELLE HLAAKCGRND ANSHVFIDEF IPTLEMDKGI CYTHPKDLPG 180 VSKDGNSVHF FHKTANAYAS GQRKRRKIQN EQNHETVRWH KTGKTKPIFD NCVQKGCKKI 240 MVLYRSSRKG SKPVKSNWVM HQYHLGIEED ERDGEYVVSK IFYQQNNKQN EAVDDDIIAG 300 NESVRVVTPH CPKTPMNPTP NPRRIESFLL GDDATDDCNT GANKEDLEPA NAEFSAPGIH 360 PKEEIKPQAE ESRALDTNID DVDLRCNEIF SSCMPFDNNI FHGLNDIDVN GACDITGLEN 420 IELDSQDLQD IQFGSQDSIL SWLDKLY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010686990.1 | 1e-162 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 3e-84 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0K9QMT0 | 1e-141 | A0A0K9QMT0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686990.1 | 1e-162 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 3e-87 | NAC domain containing protein 85 |