PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca12450.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 326aa    MW: 36506.7 Da    PI: 7.1343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca12450.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-20113162255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a++k++g
  Dca12450.1 113 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALKFKG 162
                 7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-33112171IPR001471AP2/ERF domain
PfamPF008471.1E-13113162IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-22113171IPR016177DNA-binding domain
SMARTSM003805.2E-38113176IPR001471AP2/ERF domain
PROSITE profilePS5103224.948113170IPR001471AP2/ERF domain
CDDcd000181.71E-20113171No hitNo description
PRINTSPR003672.4E-11114125IPR001471AP2/ERF domain
PRINTSPR003672.4E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MASREEDHKN NNNSTNNNYW ENYEQQHAAN LNFPVYSARS QHDTCAMVQA LSQVIGSSSS  60
GSGSSSGSTV DRHGNQQQIL HANSTGNQQY NQYPQTNTGV VVGQGEENVR KRHYRGVRQR  120
PWGKWAAEIR DPKKAARVWL GTFETAEAAA LAYDEAALKF KGNKAKLNFP ERVQTKLNPT  180
YHQQQQGFYI PFSNSLQQQD HQQQGGLNYA LPYAPLDYNY MMSTTPSSNN LPHISQEEGS  240
SSLSFAQFPG FNNNPQHLYG NFSSFDNSLL ESSSSSSSSF VGDQRLLFGS QSMPQVKVEN  300
LTMEEYEKMI LSSKGRNYPF GDHSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27112173163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844726.15e-59ethylene-responsive transcription factor ERF114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-40ERF family protein