PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca12416.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 271aa MW: 29408.9 Da PI: 8.8888

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca12416.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	44.6	2.3e-14	110	136	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yktelC+ + +G+C+yG++C+FaHg+ Dca12416.1 110 YKTELCKSWEDSGYCRYGSKCQFAHGQ 136 9************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.1E-18	107	141	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-10	109	140	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-8	109	136	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.746	110	137	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-11	110	136	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MSTYFTSNTN FQNDCVSPIT PPAPIPSLSS ENPFVLKYLR SSLPSDYSSP YLGHPIMNYY 60 RGNITGSGGS SSGSNRTPLS PLVRMEEDML VMDGVLIEPK SSSISSGSHY KTELCKSWED 120 SGYCRYGSKC QFAHGQEELR SFPNRQRNMK KLEQLQVNKP KHSPSSSSAS PRNAVSPNHT 180 ATTPGTSSAS STQKLAITPG TSLSSTTSKP TNPSPLLSKN WSPMDDGITI SLPGSTDKAP 240 ATADVDRYIN NVLYGPTSRK RLPVFLEICP E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-08	C3H family protein