PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca11608.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 538aa MW: 61282.3 Da PI: 9.6719

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11608.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.5e-07	126	166	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y++ L Dca11608.1 126 ARQRRERISERLRVLQKLVPGG-----TKMDTATMLDEAANYLRFL 166 69****************87.....8*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.932	117	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.70E-10	123	171	No hit	No description
SMART	SM00353	3.1E-13	123	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-13	123	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-11	125	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-5	126	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF03004	2.0E-12	320	445	IPR004252	Probable transposase, Ptta/En/Spm, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MHTIQENHSK SNSTTHTTTT SGPKGNYKRQ RQRYSPNNNN LNARSKIQIS SNSSLNISFQ 60 QVGSSSGTAL LGANNAEPDA EAIQQMKEMI YRAAAFRPVN FGTEELEKPN KRKNVRISSD 120 PQTVAARQRR ERISERLRVL QKLVPGGTKM DTATMLDEAA NYLRFLRNQV KDLENLGRSR 180 KGSSSRSSMR SDEETESSDS QETQQQNEEQ EADDTPPTDA TGKLILDPKS YWFPQKKITK 240 ACTESTKSSY TSGYTCWSSI PDDLKEQWFN IFRNSCTWNP VLEHLVRAKY EKTCQKRFKD 300 NMWKAVKRKK KPAFMNDVAF NDLLKLRDTP EFQRKSKQAA LNIRGGDPNA RVEPSYFRGS 360 QSCLDRAQEL EKANKGQAAT AFDIFLDTHA KKDEEGRLHF ARKKDSDKYE AYMKRVEEEP 420 GTKPDQIWLE VNEGFKKGAV YGVGNAAEYI YEKRNRRLST VSDSMYTPGI VRKLEDRVAN 480 QDERLSAQDE ELRLMREQLQ RMQTYFEQCN PGIGPQFPDP RDPHGGGPSS GASVGFQV

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MHTIQENHSK SNSTTHTTTT SGPKGNYKRQ RQRYSPNNNN LNARSKIQIS SNSSLNISFQ  60
QVGSSSGTAL LGANNAEPDA EAIQQMKEMI YRAAAFRPVN FGTEELEKPN KRKNVRISSD  120
PQTVAARQRR ERISERLRVL QKLVPGGTKM DTATMLDEAA NYLRFLRNQV KDLENLGRSR  180
KGSSSRSSMR SDEETESSDS QETQQQNEEQ EADDTPPTDA TGKLILDPKS YWFPQKKITK  240
ACTESTKSSY TSGYTCWSSI PDDLKEQWFN IFRNSCTWNP VLEHLVRAKY EKTCQKRFKD  300
NMWKAVKRKK KPAFMNDVAF NDLLKLRDTP EFQRKSKQAA LNIRGGDPNA RVEPSYFRGS  360
QSCLDRAQEL EKANKGQAAT AFDIFLDTHA KKDEEGRLHF ARKKDSDKYE AYMKRVEEEP  420
GTKPDQIWLE VNEGFKKGAV YGVGNAAEYI YEKRNRRLST VSDSMYTPGI VRKLEDRVAN  480
QDERLSAQDE ELRLMREQLQ RMQTYFEQCN PGIGPQFPDP RDPHGGGPSS GASVGFQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KRQRQR
2	126	131	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-42	bHLH family protein