PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca11432.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 555aa MW: 61344.6 Da PI: 6.6181

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11432.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.1	4.7e-09	464	512	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lvd+v ++G+g+W+ I r Rt+ ++k++w+++l Dca11432.1 464 AWTLTEVVKLVDGVSKFGPGHWSEIKRLSFssySYRTAVDLKDKWRNLL 512 7*************************9999999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.077	457	516	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-12	459	515	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.64E-15	459	517	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-8	461	514	IPR001005	SANT/Myb domain
CDD	cd11660	3.04E-18	463	513	No hit	No description
Pfam	PF00249	4.5E-6	464	512	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MEVAFQADKS ERGCVENSGN IGLDSASLKH VGDPVVYKLV RIDLDGRLVP ATDDELAEVE 60 NLLESENDDI FSGSDVFDTV RQCLEKDDPN TSQNKGSTRI KNEDDDASVN PHLKVSLYAS 120 ESNSKLVDKS NRVMDTLGVE NGKTNSCGSG PNFSLLKGDI NLDQLTIREL QETFKATFGR 180 KTTVKDKVWL KRRIAMGLTN SCDVSATSFL IGDGKLLQKS DDICNGGEVG SSGEDMSANT 240 GSHLSLSTDA ADSVISMTSL DESAQRAAKR FRKPRKRYIE ELSEKETSDN TEKSVVSSKD 300 NEHDKPSLSS ANKTAWSVNT GAFVTRRDLF GGSRVQVPYV SRVRRCRPRQ SIMNIVKFDL 360 NEVTLTRKKV ESSDEPNKAQ FDTGSKVKSV DDKSIHHEDL MAINESAEKQ SMTSMSDSIQ 420 KRELKIMDSG DYVSRDDDAG ANSDDYVATV PTAKGGMRRK HHRAWTLTEV VKLVDGVSKF 480 GPGHWSEIKR LSFSSYSYRT AVDLKDKWRN LLKASFATLP AENGMNYRMK TPLLIPAPIL 540 VKVRELAEIN GQTPK

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MEVAFQADKS ERGCVENSGN IGLDSASLKH VGDPVVYKLV RIDLDGRLVP ATDDELAEVE  60
NLLESENDDI FSGSDVFDTV RQCLEKDDPN TSQNKGSTRI KNEDDDASVN PHLKVSLYAS  120
ESNSKLVDKS NRVMDTLGVE NGKTNSCGSG PNFSLLKGDI NLDQLTIREL QETFKATFGR  180
KTTVKDKVWL KRRIAMGLTN SCDVSATSFL IGDGKLLQKS DDICNGGEVG SSGEDMSANT  240
GSHLSLSTDA ADSVISMTSL DESAQRAAKR FRKPRKRYIE ELSEKETSDN TEKSVVSSKD  300
NEHDKPSLSS ANKTAWSVNT GAFVTRRDLF GGSRVQVPYV SRVRRCRPRQ SIMNIVKFDL  360
NEVTLTRKKV ESSDEPNKAQ FDTGSKVKSV DDKSIHHEDL MAINESAEKQ SMTSMSDSIQ  420
KRELKIMDSG DYVSRDDDAG ANSDDYVATV PTAKGGMRRK HHRAWTLTEV VKLVDGVSKF  480
GPGHWSEIKR LSFSSYSYRT AVDLKDKWRN LLKASFATLP AENGMNYRMK TPLLIPAPIL  540
VKVRELAEIN GQTPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685325.1	1e-179	PREDICTED: uncharacterized protein LOC104899762 isoform X2
TrEMBL	G5DWJ6	0.0	G5DWJ6_SILLA; Protein TRF-like protein (Fragment)
STRING	XP_010685324.1	1e-177	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	5e-80	TRF-like 6