PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11427.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NF-YA
Protein Properties Length: 324aa    MW: 36302.9 Da    PI: 8.4189
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11427.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.65.8e-30179234258
   CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 e +YVNaKQy++Il+RRq+Rakle+++kl  ++rkpylheSRh+hA++R+RgsgGrF
  Dca11427.1 179 EHIYVNAKQYRGILRRRQHRAKLEAQNKL-LRNRKPYLHESRHQHAVKRARGSGGRF 234
                 789**************************.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-32176237IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.144177237IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-21180202IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.6E-26180234IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860182202IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-21211234IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MHGSEKERDI SISKSASDSG LSFQALWPSD EPHPPDSALS NNSIFKMGLP THRYQGVKML  60
DFSLQDQDSS STQSTGQSYP KANCVDETDF NTQRMSFTQS GHNISHGKHE GSENKFTSVG  120
GAHNYYLPPL QADYTPSFPA INFQDQPFGR VLPAYDPQAM VMGVSPARVP LPLDLSTNEH  180
IYVNAKQYRG ILRRRQHRAK LEAQNKLLRN RKPYLHESRH QHAVKRARGS GGRFLTKKEL  240
QESNPVSTTN DNHTFSDSYS LHLGGKMNDS GLRSQERNTE GASTTSGSNI TTNNNDIFHP  300
PEFRFYDYTS RIEESMQSGG GNYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18177239163NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716502.11e-112nuclear transcription factor Y subunit A-3-like
TrEMBLA0A2I7ZAT71e-124A0A2I7ZAT7_SESPO; Nuclear factor Y subunit A8
STRINGXP_010685336.11e-108(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.46e-39nuclear factor Y, subunit A8