PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11404.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 281aa    MW: 30042.1 Da    PI: 9.5359
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11404.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-1095120227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC++f+    Ck+Gd+C+FaHg+
  Dca11404.1  95 KTRLCKRFSSAEGCKFGDSCNFAHGE 120
                 9***********************96 PP
2zf-CCCH35.91.3e-11248273127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ykt+lC +f   GtC +Gd+C+FaHg+
  Dca11404.1 248 YKTKLCENFTM-GTCTFGDKCHFAHGE 273
                 9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.8643260IPR000571Zinc finger, CCCH-type
SMARTSM003560.773259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-53358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-63457IPR000571Zinc finger, CCCH-type
PfamPF146083.34057No hitNo description
Gene3DG3DSA:4.10.1000.103.2E-1292124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-793124IPR000571Zinc finger, CCCH-type
SMARTSM003560.001293120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.82193121IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-895120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.102.2E-15152226IPR004088K Homology domain, type 1
SuperFamilySSF547913.36E-14152227IPR004088K Homology domain, type 1
SMARTSM003221.0E-10155225IPR004087K Homology domain
PROSITE profilePS5008413.858156220IPR004088K Homology domain, type 1
PfamPF000132.4E-9159221IPR004088K Homology domain, type 1
CDDcd001052.07E-12159220No hitNo description
Gene3DG3DSA:4.10.1000.104.6E-17245278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.018247274IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8247273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-9247277IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-9248273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDARKRRQPG GAPNTNGGFK KSKQETDSSG VGSKSKPCTK FFSTSGCSFG ETCHYLHYVP  60
GGYKAVAQMM NLPPMDRMGP PLPPQPLNGA APAMKTRLCK RFSSAEGCKF GDSCNFAHGE  120
WQLNTPAAMP FEHRHPMGPP MQGRAGLSAG FGESENANVK IAVESSMVGP IIGKSGVNSK  180
QICRQTGVRL AIRDHESNPN MKNIELEGTF EQIKIATDMV RNLMNSVSAS GKGHGGTGPA  240
HGPGSNNYKT KLCENFTMGT CTFGDKCHFA HGESELRKSG V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672666.11e-129PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R05e-92C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9RDP71e-124A0A0K9RDP7_SPIOL; Uncharacterized protein
STRINGXP_010672666.11e-129(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-71C3H family protein