PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Dof
Protein Properties Length: 357aa    MW: 39609 Da    PI: 7.8046
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11390.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.21.8e-38120179261
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 +ek+l+cprC+s+ tkfCy+nny+++qPr+fCk C+ryWt+GG++rnvPvG+grrk+k+s
  Dca11390.1 120 PEKILPCPRCNSMSTKFCYFNNYNVNQPRHFCKDCQRYWTTGGTMRNVPVGAGRRKSKSS 179
                 78999****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-29117177IPR003851Zinc finger, Dof-type
PfamPF027013.6E-31122178IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.248124178IPR003851Zinc finger, Dof-type
PROSITE patternPS013610126162IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSFMNDPGLK LFGKIIQVNS KDTNWNLNVD DDISDFGDDN CHNKECVISN DNLDKCENRG  60
NFEETICEAS KNQMRNSTLV EDGTLALNEK LCSSQYSHNK DGNDQTSSTD QNGQQQLKKP  120
EKILPCPRCN SMSTKFCYFN NYNVNQPRHF CKDCQRYWTT GGTMRNVPVG AGRRKSKSSV  180
ASQHRHLLVP RVASELRTSS YDSYVSPLFF KNGGPVQVSC FRGLVGFPVS YSDQSVTTCS  240
SPTSSTSRKH SRDGAMLNFS SSDGINKDVT WDGKSTNGQV VIPKTLKVDD PIEASNSSIW  300
STLRGKNNCN GSDSNAKGEF FGGLHMINYR SSEPLSMVLD LNPAAFSRSL SFHEMAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842986.12e-67cyclic dof factor 1-like isoform X2
RefseqXP_021842987.12e-67cyclic dof factor 1-like isoform X2
RefseqXP_021842988.12e-67cyclic dof factor 1-like isoform X2
STRINGXP_010483955.11e-55(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.15e-55cycling DOF factor 1