PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca11390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | Dof | ||||||||
Protein Properties | Length: 357aa MW: 39609 Da PI: 7.8046 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.2 | 1.8e-38 | 120 | 179 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek+l+cprC+s+ tkfCy+nny+++qPr+fCk C+ryWt+GG++rnvPvG+grrk+k+s Dca11390.1 120 PEKILPCPRCNSMSTKFCYFNNYNVNQPRHFCKDCQRYWTTGGTMRNVPVGAGRRKSKSS 179 78999****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-29 | 117 | 177 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-31 | 122 | 178 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.248 | 124 | 178 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 126 | 162 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MSFMNDPGLK LFGKIIQVNS KDTNWNLNVD DDISDFGDDN CHNKECVISN DNLDKCENRG 60 NFEETICEAS KNQMRNSTLV EDGTLALNEK LCSSQYSHNK DGNDQTSSTD QNGQQQLKKP 120 EKILPCPRCN SMSTKFCYFN NYNVNQPRHF CKDCQRYWTT GGTMRNVPVG AGRRKSKSSV 180 ASQHRHLLVP RVASELRTSS YDSYVSPLFF KNGGPVQVSC FRGLVGFPVS YSDQSVTTCS 240 SPTSSTSRKH SRDGAMLNFS SSDGINKDVT WDGKSTNGQV VIPKTLKVDD PIEASNSSIW 300 STLRGKNNCN GSDSNAKGEF FGGLHMINYR SSEPLSMVLD LNPAAFSRSL SFHEMAP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021842986.1 | 2e-67 | cyclic dof factor 1-like isoform X2 | ||||
Refseq | XP_021842987.1 | 2e-67 | cyclic dof factor 1-like isoform X2 | ||||
Refseq | XP_021842988.1 | 2e-67 | cyclic dof factor 1-like isoform X2 | ||||
STRING | XP_010483955.1 | 1e-55 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 5e-55 | cycling DOF factor 1 |