PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca11233.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 247aa MW: 28794.2 Da PI: 5.1978

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11233.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.5	2.8e-49	6	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lppGfrF+Ptdeelv +yLk+kve ++el evi+ ++ yk++PwdLp + + +++ ew+fFs+rd+ky++g+r+nratk+g+Wkatgkd++v+++ Dca11233.1 6 LPPGFRFRPTDEELVGFYLKRKVEMLETEL-EVIPVIEFYKYDPWDLPdRsFLPKRDMEWFFFSPRDRKYPNGSRTNRATKAGFWKATGKDRKVVCEsg 103 79***********************999.99**********95335566888**********************************976 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g +ktLvfy+grap g++tdW+m eyrl Dca11233.1 104 SESVTGFRKTLVFYQGRAPLGHRTDWMMYEYRL 136 66779************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-55	3	152	IPR003441	NAC domain
PROSITE profile	PS51005	56.056	6	152	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MRSATLPPGF RFRPTDEELV GFYLKRKVEM LETELEVIPV IEFYKYDPWD LPDRSFLPKR 60 DMEWFFFSPR DRKYPNGSRT NRATKAGFWK ATGKDRKVVC ESGSESVTGF RKTLVFYQGR 120 APLGHRTDWM MYEYRLSDDT HGAFVLCRVI KKNGFNEKAK AQDEMSSAYY SFSEFDHSTL 180 LQFQPYQQPG GSPSTSYSNF AENETVDGLN LFGCMSPYYA DIDYMTYMGD YGNVSDFYDS 240 YENPTSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-46	1	158	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-46	1	158	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-46	1	158	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-46	1	158	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-46	1	158	15	174	NAC domain-containing protein 19
3swm_B	4e-46	1	158	15	174	NAC domain-containing protein 19
3swm_C	4e-46	1	158	15	174	NAC domain-containing protein 19
3swm_D	4e-46	1	158	15	174	NAC domain-containing protein 19
3swp_A	4e-46	1	158	15	174	NAC domain-containing protein 19
3swp_B	4e-46	1	158	15	174	NAC domain-containing protein 19
3swp_C	4e-46	1	158	15	174	NAC domain-containing protein 19
3swp_D	4e-46	1	158	15	174	NAC domain-containing protein 19
4dul_A	3e-46	1	158	12	171	NAC domain-containing protein 19
4dul_B	3e-46	1	158	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021768141.1	5e-91	NAC domain-containing protein 71-like
Swissprot	O49697	3e-79	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A088FL45	1e-90	A0A088FL45_9CARY; Putative NAC transcription factor
STRING	XP_010677286.1	2e-87	(Beta vulgaris)
STRING	XP_007155764.1	2e-87	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-81	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]