PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11198.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 315aa    MW: 35149.2 Da    PI: 5.0631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11198.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20145195255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ta eAa+a+++a+ +l+g
  Dca11198.1 145 HYRGVRRRP-WGKYAAEIRDP---NkKGSRVWLGTYDTAIEAARAYDRAAFRLRG 195
                 7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-32144204IPR001471AP2/ERF domain
PROSITE profilePS5103224.711145203IPR001471AP2/ERF domain
PfamPF008471.5E-14145195IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-23145205IPR016177DNA-binding domain
SMARTSM003807.0E-38145209IPR001471AP2/ERF domain
PRINTSPR003671.8E-13146157IPR001471AP2/ERF domain
CDDcd000186.10E-26153203No hitNo description
PRINTSPR003671.8E-13185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MATTNNALEF IENLLFNELS PLPQNSMFTF NPNNNNGNSF SGFESSCVTT SSNDSADSYS  60
LEKQPSITSV KAEEFALDFD FDFDFDLNFT FPTPNPAAKP KPAEEEKKPR KRPAMKIAVP  120
KPAKNYEVVE LTTESAEVVE EERRHYRGVR RRPWGKYAAE IRDPNKKGSR VWLGTYDTAI  180
EAARAYDRAA FRLRGSKAIL NFPLEVGKLV QESTAIAPAV ISSSDSKVDN NTKRKIDEIV  240
TNNGNGSDEK SEKKVKVEES KTVSLEEVRP LTPSSWTAFW EVDDNKEVKD GIFSVPPLSP  300
LSPHPTFGFP QVAVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29144206163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021768012.15e-70ethylene-responsive transcription factor ERF104-like
SwissprotQ8VY902e-53EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A0M4KPH84e-62A0A0M4KPH8_9ROSA; AP2/EREBP family transcription factor-like protein 14
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]