PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11158.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CPP
Protein Properties Length: 758aa    MW: 84003.8 Da    PI: 5.8036
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11158.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.71.5e-15488527241
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                 ++k+CnCk+skClk+YC+Cfaag +C e C+C++C+Nk  
  Dca11158.1 488 SCKRCNCKRSKCLKLYCDCFAAGLYCVEPCNCQGCFNKPA 527
                 689**********************************975 PP
2TCR452.2e-14576609740
         TCR   7 nCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 +Ckks ClkkYCeCf+ g+ Cs +C+Ce CkN+ 
  Dca11158.1 576 TCKKSGCLKKYCECFQGGVGCSPSCRCEVCKNTF 609
                 6*******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-16487528IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.353488610IPR005172CRC domain
PfamPF036384.7E-11490525IPR005172CRC domain
PfamPF036383.7E-11576608IPR005172CRC domain
SMARTSM011142.1E-8577611IPR033467Tesmin/TSO1-like CXC domain
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MDTPDNSNPK PSSSFLSKFE DSPVFNYIST LSPIKQFSLN HSAPSFRLLS FTSPVQLESL  60
QTPLPITCPQ EPNVQSANHD TGALMNNSAQ DATEGRNADP SKVVQPCESR VEKSDKLNTR  120
REVYVTTNEP SKLANVIRRV KHECVSPESN VACSRVAKLD FEFCGVKTTE SISSKIVQEN  180
QDDPKEAELL PKLEISTDVE DNKEVCEWEK FIHETCDIFG SQSPTQETHN EDQCDENDDS  240
ETFSFIREFL QTPSENIDGS QRVDPSCPCE SIENHEGATR WDETTQTCQV SSLRAHTILA  300
EEAVNYAKTD VDEKPATQQQ QTASRRCLVY EVSGSHYRKL LSESTSSSPA SNLAASTTTS  360
NEQRIASSKR GSNKFSSALP GIGLHLNPLA STGREKIIVK RESLTCRRQL ISVPGTASSF  420
NPLKPDVESL KPPSGTETVG RVSDMQKDVT CLNENTSENS AFCEDIGLPP GSPQKKWKNP  480
DTVGESDSCK RCNCKRSKCL KLYCDCFAAG LYCVEPCNCQ GCFNKPAHED MVLETRRQIE  540
SRNPLAFAPK VVICSSTPIN VVRSLVAFMS LYEVITCKKS GCLKKYCECF QGGVGCSPSC  600
RCEVCKNTFG RKKGFQGIVF EEAKILHKSA PSVTSHDEVL KTDHDNQEIP EPPNKERQPP  660
EFTLRPCGKS LESSTSQKID NSNVNNIAEK DEPADDYLIP TTTVKSTSPN CKRISSHHHD  720
FEPSPAWKSS RKLILRAVPS YSTVPKQQES SELQEIRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1149260714120Protein lin-54 homolog
5fd3_B7e-1149260714120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021773185.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 3
TrEMBLA0A0K9QWU50.0A0A0K9QWU5_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.11e-49Tesmin/TSO1-like CXC domain-containing protein