PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca10858.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SRS
Protein Properties Length: 390aa    MW: 42561.5 Da    PI: 7.9266
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca10858.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022204.9e-681463033154
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaasaaeaaskrkrelkskkqs...alsstklssaes. 96 
                  g+++CqdCGnqakkdCah RCRtCCksrgfdC thvkstWvpaakrrer qqqlaa++++++ + ++  +++++++++++q+   +l +++l ++ + 
  Dca10858.1 146 GGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFDCPTHVKSTWVPAAKRRERhQQQLAALHHHSSPDDHHTPPQQQQQQQNQQQQqlmNLREKRLREHRTg 244
                 5789**********************************************6667777766666655544444444443333330003444555555441 PP

      DUF702  97 .kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  ++ le s++P+e +++a+frcv+vs++dd ee++aYqtav+igGhvfkGiLydqG+e+
  Dca10858.1 245 aSTGLELSNFPPEFNTPALFRCVKVSAMDDPEEQYAYQTAVNIGGHVFKGILYDQGPEN 303
                 144566777************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-63148302IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.8E-27150192IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.4E-25254301IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MATFFSLGTP GNNNEPNNSQ NPDPNNLNQV INPNPNPNPN QNPNQGVYEI YPKGSFEIWQ  60
QYVQVHHHHH APPHTKFHLH HTPPPPHFLL GEPSSSTHHN NNNLIYHTSN SNSNNNSNNS  120
GNNNNNNSSS RFYRQLGGGS GGSGSGGGMN CQDCGNQAKK DCAHLRCRTC CKSRGFDCPT  180
HVKSTWVPAA KRRERHQQQL AALHHHSSPD DHHTPPQQQQ QQQNQQQQQL MNLREKRLRE  240
HRTGASTGLE LSNFPPEFNT PALFRCVKVS AMDDPEEQYA YQTAVNIGGH VFKGILYDQG  300
PENRYGSGGS SSAGGGESSS VGAHHHQQNL MLTATTATTT VAMTTDLMGG VGGNVTTASL  360
LDPMAANAAV YPTPINAFLA GTQFFPPPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672367.17e-87PREDICTED: protein SHI RELATED SEQUENCE 1-like
RefseqXP_021862466.19e-87protein SHI RELATED SEQUENCE 1-like
SwissprotQ9LQZ59e-67SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
SwissprotQ9SD401e-66SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A0K9R9411e-85A0A0K9R941_SPIOL; Uncharacterized protein
STRINGXP_010672367.13e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-57Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]