PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca10554.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 298aa    MW: 34405.2 Da    PI: 6.6687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca10554.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.4e-192774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
       Dca10554.1 27 RGPWTVEEDLNLINYIAIHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 74
                     89********************************************97 PP
2Myb_DNA-binding48.81.6e-1580123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
       Dca10554.1  80 RGNITLEEQLMILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 123
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.7862278IPR017930Myb domain
SuperFamilySSF466892.85E-3124121IPR009057Homeodomain-like
SMARTSM007176.3E-162676IPR001005SANT/Myb domain
PfamPF002498.4E-172774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-222881IPR009057Homeodomain-like
CDDcd001671.73E-122974No hitNo description
SMARTSM007175.7E-1479127IPR001005SANT/Myb domain
PROSITE profilePS5129417.8479129IPR017930Myb domain
PfamPF002492.6E-1480123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2282128IPR009057Homeodomain-like
CDDcd001671.12E-1084123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRQSSSSSCN NGSTITQSSE DEMDLRRGPW TVEEDLNLIN YIAIHGEGRW NSLARCAGLK  60
RTGKSCRLRW LNYLRPDVRR GNITLEEQLM ILELHSRWGN RWSKIAQYLP GRTDNEIKNY  120
WRTRVQKHAK QLKCDVNSKQ FKDTMRYLWM PRLVERIQAA TVTPTVSTAS INDSTTTVGY  180
SDPSKSINLA NFNSNFTPEN STNSSTASLV TQISDISDYY GLQVTNHTVN QDYLGDNHMS  240
YGVDQPLMSP NDYVNDQGLE FQVANNNNNN MEQITQQQWC MDNLWNIEDV YFLQKQFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-252412124120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666321.11e-133PREDICTED: transcription factor MYB108
SwissprotQ9FGY36e-93MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A0J8B5B61e-131A0A0J8B5B6_BETVU; Uncharacterized protein
STRINGXP_010666321.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-90myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]