PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca10360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23067.1 Da PI: 7.2126 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp++ ++r++lg+f+ta +Aa+a++ a+++l+g Dca10360.1 30 KFRGVRKRP-WGRFAAEIRDPVK---KTRVWLGTFDTAVDAARAYDIAALNLRG 79 79*******.**********654...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-36 | 30 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 30 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 30 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 30 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-11 | 30 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.43E-31 | 30 | 86 | No hit | No description |
PRINTS | PR00367 | 5.6E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MRRIRSTTAT TAAGAGAAPN TAADPPSDFK FRGVRKRPWG RFAAEIRDPV KKTRVWLGTF 60 DTAVDAARAY DIAALNLRGP KAKTNFLSPL LPSAAGDHRR RTPEMEATVV EIMIQRPATS 120 GMSSTVESYS GPKPVHVRSS CEKTKLPPLD CRSDCDSSSS VIDCEDFADI ASAMATATSS 180 GGSVTKCPLP FDLNLPPVDF LEYDDDDLPS TALCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 31 | 86 | 6 | 62 | ATERF1 |
3gcc_A | 1e-19 | 31 | 86 | 6 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849043.1 | 5e-52 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0V0HV08 | 5e-52 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 1e-24 | ethylene responsive element binding factor 3 |