PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca10310.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 297aa MW: 32584.5 Da PI: 10.8604

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca10310.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	7.9e-14	110	154	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Dca10310.1 110 PWTEEEHRLFLVGLNEVGKGDWRGISRNFVKTRTPTQVASHAQKY 154 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.132	103	159	IPR017930	Myb domain
SuperFamily	SSF46689	6.88E-17	105	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-16	106	158	IPR006447	Myb domain, plants
SMART	SM00717	2.8E-10	107	157	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-10	109	154	IPR009057	Homeodomain-like
Pfam	PF00249	5.1E-11	110	154	IPR001005	SANT/Myb domain
CDD	cd00167	2.56E-9	110	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MAAQPPNTVV GKSIAGVNHG VMLFGVRLTP PIESAPSFPP PLSPPSSSSS SSFRKCMSMN 60 NLAQYELQQQ QFQRRNSQCS AVDGAGGGYV SDDSLHVSGC RNRDRKRGVP WTEEEHRLFL 120 VGLNEVGKGD WRGISRNFVK TRTPTQVASH AQKYFLRKTN LNRRRRRSSL FDITTDTMSR 180 SASADQLHNL DKLCQSGQQA QPPTIFTHPS PSKLLPISTP FNTTPPSSKI AKLNLNQSPT 240 SSPTSSASTV SPTRETELEP FLSLKLSQQA PSKDDTSRQS NAFRGFNGNR DNIISVV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849899.1	6e-78	transcription factor MYB1R1
Swissprot	Q7XC57	5e-44	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A0K9R9Z7	1e-76	A0A0K9R9Z7_SPIOL; Uncharacterized protein
STRING	XP_010683349.1	4e-76	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	2e-44	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]