PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_032134
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 283aa    MW: 32607.7 Da    PI: 7.0263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_032134genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34e-092472147
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     r +WTte+ +++  + +++ ++   +W ++a +++ g+t +++++ ++k+
      DCAR_032134 24 RTNWTTEDNKKFESCLALYDKEtpdRWIKVALMIP-GKTVYDVIEQYRKL 72
                     679*****************99*************.************97 PP
2Myb_DNA-binding42.41.6e-13128172347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + +++G+g+W+ Iar +  ++t  q+ s+ qky
      DCAR_032134 128 PWTEDEHRRFLMGLQKHGKGDWRNIARNFVITKTSTQVASHAQKY 172
                      8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.2692277IPR017884SANT domain
SMARTSM007171.8E-72375IPR001005SANT/Myb domain
PfamPF002491.3E-62472IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-102578IPR009057Homeodomain-like
CDDcd001671.33E-52673No hitNo description
PROSITE profilePS5129418.89121177IPR017930Myb domain
SuperFamilySSF466891.5E-15123176IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17124176IPR006447Myb domain, plants
SMARTSM007175.4E-11125175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-11125172IPR009057Homeodomain-like
CDDcd001676.15E-9128172No hitNo description
PfamPF002498.6E-12128172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
METLYPASHT FNSNWSMQEF QSTRTNWTTE DNKKFESCLA LYDKETPDRW IKVALMIPGK  60
TVYDVIEQYR KLVADISDIE AGLFPLPPGD PQDSSFTMEL AGIPELNEFR KRPLACRSSD  120
QEKKKGVPWT EDEHRRFLMG LQKHGKGDWR NIARNFVITK TSTQVASHAQ KYYLRQLSEG  180
KEKRRPSIHD ITTTHLTDTT PSDDYKFPAD DKSTFIPQPE KPISMPQKVL DWNKTDDELL  240
MMFNSMHNNT LTAYKHETGD LGAGFSPLNP GFQFRAGRHQ IW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1327871171RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228695.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017228696.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017228697.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-75DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A175YBE90.0A0A175YBE9_DAUCS; Uncharacterized protein
STRINGVIT_13s0019g03370.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-73MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]