PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_032067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 226aa MW: 25940.8 Da PI: 10.5629 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 68.6 | 1e-21 | 113 | 165 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r++Wt + H++Fv+av+ + G +k Pk+ilelm+v+ Lt+e+v+SHLQkY l DCAR_032067 113 TRVVWTVDPHQKFVKAVNYM-GFDKVGPKKILELMNVPWLTRENVASHLQKYQL 165 79******************.9******************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53659 | 2.67E-14 | 18 | 72 | No hit | No description |
Gene3D | G3DSA:3.40.718.10 | 4.1E-16 | 20 | 68 | IPR024084 | Isopropylmalate dehydrogenase-like domain |
Pfam | PF00180 | 9.8E-8 | 20 | 72 | IPR024084 | Isopropylmalate dehydrogenase-like domain |
SuperFamily | SSF46689 | 4.3E-17 | 110 | 169 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 111 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-19 | 113 | 165 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-6 | 114 | 163 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016616 | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MRSVRKNSKK IRGNVYEILK NSERIAKYAF EYAYLNNRRM VTAVHKANIK KLADGLFLES 60 CREVASKYPA VEEVFFSRSQ LIHCDLNSGR KRKDFDNKHN DKNFGHPSAG KRTRVVWTVD 120 PHQKFVKAVN YMGFDKVGPK KILELMNVPW LTRENVASHL QKYQLYLSRL QKENDLKPSH 180 GGIKQSTDAT SRDQAGNLGF KNSINITHNN AANTNFLIYS KMCML* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-17 | 108 | 170 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017224636.1 | 2e-81 | PREDICTED: two-component response regulator ORR26 | ||||
Swissprot | Q5N6V8 | 6e-35 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A175YBM3 | 1e-168 | A0A175YBM3_DAUCS; Uncharacterized protein | ||||
STRING | XP_004310018.1 | 7e-52 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67710.1 | 2e-31 | response regulator 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_032067 |
Publications ? help Back to Top | |||
---|---|---|---|
|