PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_031897 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | B3 | ||||||||
Protein Properties | Length: 232aa MW: 26664.4 Da PI: 8.9087 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.1 | 5e-11 | 106 | 217 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHH.HHHHHHT--TT-EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltled.esgrsWevkliyrkksgryvltkGWk.eFvkangLkegDfvvF 82 +k+l++sd ++ rl+l k+ +++h + ++ e++ +++ d e+ r++e+kl+ + +s++yv ++ W+ eFvk+ +Lk gD++ + DCAR_031897 106 KKTLKHSDCDRLYRLTLCKDMVQNHiikvweeagkvdeieKVVSDEGVAVKVWDyEREREYELKLKKQSSSKSYVVSGAWRkEFVKERRLKKGDIIGL 203 6999******************999****99987776655444448889999998888*******88999999*******637*************** PP EE-SS.SEE..EEEEE CS B3 83 kldgr.sefelvvkvf 97 + + s+f v++v+ DCAR_031897 204 YWCTSkSRF--VFSVL 217 *76543555..76665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.43E-12 | 101 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-10 | 103 | 217 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-12 | 105 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0014 | 105 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-7 | 107 | 217 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MNMKIDTMKS PNEIPEESRK RRLEDLDAGS LRLSTPSCYT NCDAAVFEKP ENSTFDSALN 60 IRIAKNISGF RSYTHEEEAR ERFLGVSTKL KLWIDGSEGN DPWKIKKTLK HSDCDRLYRL 120 TLCKDMVQNH IIKVWEEAGK VDEIEKVVSD EGVAVKVWDY EREREYELKL KKQSSSKSYV 180 VSGAWRKEFV KERRLKKGDI IGLYWCTSKS RFVFSVLARA PPVAVSERGG E* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017228470.1 | 1e-170 | PREDICTED: B3 domain-containing protein At2g33720-like | ||||
TrEMBL | A0A175YA58 | 1e-169 | A0A175YA58_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 2e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_031897 |