PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031543
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 317aa    MW: 35025.2 Da    PI: 6.395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031543genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-142673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
      DCAR_031543 26 KGLWSPEEDDKLMHYMLSNGQGCWSDVARNAGLQRCGKSCRLRWINYL 73
                     678*******************************************97 PP
2Myb_DNA-binding491.4e-1579122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+++ + +lG++ W+ Ia++++ gRt++++k++w++
      DCAR_031543  79 RGAFSPQEEDLIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 122
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4462173IPR017930Myb domain
SuperFamilySSF466891.33E-2723120IPR009057Homeodomain-like
SMARTSM007176.7E-102575IPR001005SANT/Myb domain
PfamPF002494.1E-132673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-222780IPR009057Homeodomain-like
CDDcd001676.19E-82973No hitNo description
PROSITE profilePS5129424.73274128IPR017930Myb domain
SMARTSM007174.4E-1578126IPR001005SANT/Myb domain
PfamPF002491.2E-1479122IPR001005SANT/Myb domain
CDDcd001674.69E-1081121No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2581129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRKPDQCGKN ISNSSSSSSH VMKLRKGLWS PEEDDKLMHY MLSNGQGCWS DVARNAGLQR  60
CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI IHFHSLLGNR WSQIAARLPG RTDNEIKNFW  120
NSTIKKRLKN SSSSSTPNTS DSSIEPKEIS TTAGIFSIPP HCSTTTMSNM DSSSTLSPSS  180
FFLQSMGLSY IVDPKMPMSA GNGINLWGTT RSYLNVPQSL QGISGNGNFG GNIGMDCELH  240
VPPLENINIA ENLGCDEVNK SNAIYSNSLN NSSKVETIGG NGNYWEGDEL RVGEWDFEEL  300
MRDVSFLPAL DFHLID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26241285108B-MYB
1h8a_C1e-262412825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227626.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A175YBJ40.0A0A175YBJ4_DAUCS; Uncharacterized protein
STRINGcassava4.1_011597m1e-109(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-71myb domain protein 46