PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_031503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 25731.7 Da PI: 6.9151 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32 | 2.2e-10 | 127 | 218 | 3 | 95 |
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +ps++l+ + +++p +f + k ++ +++++ + g sWe++++ r+ ++++ + +GW eF ++ +Lk+gD + F ++s+ ++++ DCAR_031503 127 IEVMPSHMLRYcHGVCVPTQFQPLTASWK-KKDKIRVY-RGGMSWEFEIRKRRPGNQTAIHGGWIEFRQEIELKVGDCCFFWCLDESNHHFRLE 218 55678888887667788888853332222.22367755.599*******99999999************************9555555544555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.65E-13 | 121 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-11 | 124 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.74E-11 | 124 | 221 | No hit | No description |
SMART | SM01019 | 0.0051 | 125 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-8 | 128 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.319 | 166 | 223 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MQQDNLSGSW ILSIRNGYQI HVVYDRQSMK LLGVSDLFSD FGLIGGEILL FESVDLRVFN 60 VYIMGEDGCE IQYPEVVHSS QICCPVPVLI SDGGWKFVNF ISLAFPTEDK VVSSLASTLR 120 QCLHFKIEVM PSHMLRYCHG VCVPTQFQPL TASWKKKDKI RVYRGGMSWE FEIRKRRPGN 180 QTAIHGGWIE FRQEIELKVG DCCFFWCLDE SNHHFRLEIV KSSG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 176 | KKKDKIRVYRGGMSWEFEIRKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A175YBE8 | 1e-165 | A0A175YBE8_DAUCS; Uncharacterized protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_031503 |