PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031419
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 374aa    MW: 41629 Da    PI: 6.5156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031419genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-07298338954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r+RR++i +++  L++l+P        K++ a++L +A +Y+k L
  DCAR_031419 298 ARQRREKISEKMRVLQRLVPGG-----SKMDTATMLDEAANYLKFL 338
                  69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.862289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-13295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-10295343No hitNo description
SuperFamilySSF474596.8E-14295349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-4298338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDYLDWECYP ATSSWSDHEV AEAYSGVKTG DLPGAMILKH IEELHNMTCT TEPRSHQLEY  60
YSNPEKILSQ MVQHLAVPSL DSFIVASNPS YPLSQTEAIR ISEEPPELPS VKRPYNFVME  120
NTLSGLMATT FKSTAPANTA SLESLDYCLL SATNSNTDTS VEDDGINSIF FSDYGCRNLV  180
NKSILTGANR GKISQNFGEK FSTSSRLVSS NPQPQLKKRR VLEKPLSSSN ISFQQPSNNT  240
LSGANCLIEE PDSEAMAQMK EMIYRAAAFR PVSFCDEVVE RPKRKNVRIS SDPQTVAARQ  300
RREKISEKMR VLQRLVPGGS KMDTATMLDE AANYLKFLRS QVKELESFGQ KLCFGESGTN  360
ANHPVTPFCM RKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1486240.0FJ148624.1 Daucus carota subsp. sativus clone BAC C103A09 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228030.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_017228031.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_017228032.10.0PREDICTED: transcription factor bHLH87-like
TrEMBLA0A175YC600.0A0A175YC60_DAUCS; Uncharacterized protein
STRINGXP_008351374.12e-66(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-56bHLH family protein