PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031306
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 318aa    MW: 37041.1 Da    PI: 9.7559
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031306genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.31.5e-111052244
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +++ +  r+ tf kR + + KK  EL +LCd++++vi++++++
  DCAR_031306 10 FVKKEKHRNSTFQKRNANLKKKLIELATLCDIKALVIVYGPEQ 52
                 567788999*******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.633149IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-6155IPR002100Transcription factor, MADS-box
CDDcd002662.07E-14291No hitNo description
SuperFamilySSF554553.4E-152101IPR002100Transcription factor, MADS-box
PfamPF003192.1E-111151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRAKSRMEF VKKEKHRNST FQKRNANLKK KLIELATLCD IKALVIVYGP EQGTPPALPL  60
EPQVWPEDRD EVHQLIDKYK GQSPEDCKKR TTLLSDFFQE RNKKAQQTLA KLRNTNVNSK  120
YPTWDSRFES FKEEDLRKTV NLLEINIGNA KARLEQMKAN NIYGSYQEQQ QQRKRRLDFD  180
PGNQAPKYLK IEPYQAISDP MRMHSMPIPI PQQRFPFIDH NWNQMMVKFG NEYVGVVPNI  240
VHNANPSYGY DYPTMAGTLN GFSYPNNFAR APLNYYGDGM QPIAQHVMEY HSMTEGSTSH  300
QMLAASHQFY EDRKWQR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227885.10.0PREDICTED: agamous-like MADS-box protein AGL81
TrEMBLA0A175YE160.0A0A175YE16_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-22M-type_MADS family protein