PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_031212

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 715aa MW: 77479.7 Da PI: 6.1485

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_031212	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	417.7	1e-127	350	710	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cAeavs++++e+a+++L ++s+l++p g++ qR+ ayf eA++arl++s+ ++y++lp++ + + ++ ++a+++f+ +sP++kfsh+taN DCAR_031212 350 LKLLLQCAEAVSADNFEEASTMLLEISQLSTPFGTSAQRVGAYFSEAMSARLVSSCLGIYASLPTTMVP-PHGQKMASAFQVFNGISPFVKFSHFTAN 446 689**********************************************************999887.5799999***************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpps+R+Tg+g e+le+tg+rL++fA++lg+pfef++ va+++ +l++e+++v+ DCAR_031212 447 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPSVRLTGFGT----CMEALEATGKRLSDFADKLGLPFEFSP-VADKVGNLDPERINVS 539 **********************************************....***********************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++Ea+aV++ h+l+d ++s ++ +L+l+k+l Pkvv+vveq+++h++ sFl rf+ea++y+salfdsl a++++eseer++vE++ll+rei+ DCAR_031212 540 KKEAVAVHWLQ--HSLYDVTGSDAN----TLSLLKRLAPKVVTVVEQDLSHTADSFLGRFVEAIHYFSALFDSLGASYGEESEERHVVEQQLLSREIK 631 ******9..999999999999....***************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+a g +r e +Wre+l+++GFk ++l +aa+qa lll +++sdgy++ e++g+l lgWkd L+++SaW+ DCAR_031212 632 NVLAVGGPSRSGGGELRFNWREKLQQSGFKGISLAGNAAAQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWK 710 ****************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.82	323	690	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-125	350	710	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MVRKRLASEM EVQPGDECRN RFSGRRATNL NPQTIGLHAA GVVVNNISNG NYNNTGSSNH 60 PQIPNYSTTT VMFSSSAINT STCIMDGSSH QSASPSVCVF SGLPLFPPVL QQQQQPLLSS 120 PPIVPLITPT TTTSPIGTQV GTDSNSDSSA AMAWIDGIIK DLLHSSSPVS IPQLLQNVKE 180 IIHPCNPSLA SLLESRLRTL TTTTTMDPDT MRKETTSPAI RNSQYPHYHH NLQITSKVTP 240 QLHPSSAAPP TGLVDVDNFV AVAASASASV NHYNNWELPQ TATSSNEAMP TAHIPVMLSN 300 QIKMHEDSML PPPPAAADAS QVMDDAAVFR EKRKEDIRQL KRDEEGLYLL KLLLQCAEAV 360 SADNFEEAST MLLEISQLST PFGTSAQRVG AYFSEAMSAR LVSSCLGIYA SLPTTMVPPH 420 GQKMASAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IIDLDIMQGL QWPGLFHILA 480 SRPGGPPSVR LTGFGTCMEA LEATGKRLSD FADKLGLPFE FSPVADKVGN LDPERINVSK 540 KEAVAVHWLQ HSLYDVTGSD ANTLSLLKRL APKVVTVVEQ DLSHTADSFL GRFVEAIHYF 600 SALFDSLGAS YGEESEERHV VEQQLLSREI KNVLAVGGPS RSGGGELRFN WREKLQQSGF 660 KGISLAGNAA AQATLLLGMF PSDGYTLVED NGTLKLGWKD LCLLTASAWK PLYN*

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MVRKRLASEM EVQPGDECRN RFSGRRATNL NPQTIGLHAA GVVVNNISNG NYNNTGSSNH  60
PQIPNYSTTT VMFSSSAINT STCIMDGSSH QSASPSVCVF SGLPLFPPVL QQQQQPLLSS  120
PPIVPLITPT TTTSPIGTQV GTDSNSDSSA AMAWIDGIIK DLLHSSSPVS IPQLLQNVKE  180
IIHPCNPSLA SLLESRLRTL TTTTTMDPDT MRKETTSPAI RNSQYPHYHH NLQITSKVTP  240
QLHPSSAAPP TGLVDVDNFV AVAASASASV NHYNNWELPQ TATSSNEAMP TAHIPVMLSN  300
QIKMHEDSML PPPPAAADAS QVMDDAAVFR EKRKEDIRQL KRDEEGLYLL KLLLQCAEAV  360
SADNFEEAST MLLEISQLST PFGTSAQRVG AYFSEAMSAR LVSSCLGIYA SLPTTMVPPH  420
GQKMASAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IIDLDIMQGL QWPGLFHILA  480
SRPGGPPSVR LTGFGTCMEA LEATGKRLSD FADKLGLPFE FSPVADKVGN LDPERINVSK  540
KEAVAVHWLQ HSLYDVTGSD ANTLSLLKRL APKVVTVVEQ DLSHTADSFL GRFVEAIHYF  600
SALFDSLGAS YGEESEERHV VEQQLLSREI KNVLAVGGPS RSGGGELRFN WREKLQQSGF  660
KGISLAGNAA AQATLLLGMF PSDGYTLVED NGTLKLGWKD LCLLTASAWK PLYN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	333	711	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017224402.1	0.0	PREDICTED: protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A175YJK4	0.0	A0A175YJK4_DAUCS; Uncharacterized protein
STRING	VIT_08s0056g00050.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8258	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	DCAR_031212