PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031035
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 287aa    MW: 33063.6 Da    PI: 6.4571
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031035genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.3e-1785137456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++++  ql++Le+ Fe  +++  e++ eL++ lgL+ rq+ +WFqNrRa++k
  DCAR_031035  85 KRRLNIMQLKTLEKSFELGNKLEPERKLELSRALGLQPRQIAIWFQNRRARWK 137
                  5578889*********************************************9 PP
2HD-ZIP_I/II123.78.7e-4084173291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  kkrrl+  q+k+LE+sFe  +kLeperK el+r+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lk+++d+lk+en++L++ +++L++++
  DCAR_031035  84 KKRRLNIMQLKTLEKSFELGNKLEPERKLELSRALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKSQFDSLKAENDSLQSRNKALHAQI 173
                  9**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1970141IPR009057Homeodomain-like
PROSITE profilePS5007116.34279139IPR001356Homeobox domain
SMARTSM003893.4E-1782143IPR001356Homeobox domain
CDDcd000861.37E-1384140No hitNo description
PfamPF000461.4E-1485137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-1888146IPR009057Homeodomain-like
PRINTSPR000312.9E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5119135IPR000047Helix-turn-helix motif
PfamPF021831.7E-14139179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MIQNHQHQEQ EEQVHQFPHI QNHMLPPQDF HGTIGSFLGK SSMTYSRVDQ HLHEESNVNG  60
DHVDDLSDAD DEDGSGALGS GGSKKRRLNI MQLKTLEKSF ELGNKLEPER KLELSRALGL  120
QPRQIAIWFQ NRRARWKTKQ LEKDYDLLKS QFDSLKAEND SLQSRNKALH AQILALKNRE  180
PTDSINLNKE TEGSSSNNRS TENSYEIKPD FSRTPPAIDS YPQKITSIPF FPPNTSNFIR  240
LQQPALHLSR PSDHHHHQPV KEEDFCNMLD DQTAFWPWLE QQQPFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDARKUROB0.0D26574.1 Daucus carota mRNA for DNA-binding protein (transcriptional regulator), complete cds, CHB2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224629.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC039e-78ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A175YIE10.0A0A175YIE1_DAUCS; Uncharacterized protein
TrEMBLQ434260.0Q43426_DAUCA; DNA-binding protein
STRINGXP_002520111.11e-95(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-76HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]
  5. Kawahara R,Komamine A,Fukuda H
    Isolation and characterization of homeobox-containing genes of carrot.
    Plant Mol. Biol., 1995. 27(1): p. 155-64
    [PMID:7865785]