PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031008
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 404aa    MW: 45439.6 Da    PI: 8.3867
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031008genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-16129174147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+d+v+++G+ +W++Ia+ +  gR++k+c++rw++ 
      DCAR_031008 129 RGHWRPAEDSKLKDLVALYGPQNWNLIAEQLE-GRSGKSCRLRWFNQ 174
                      899*****************************.***********996 PP
2Myb_DNA-binding53.74.7e-17181224146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++ +eE+e+l  a++++G++ W++Iar ++ gRt++ +k++w+ 
      DCAR_031008 181 RRAFNEEEEERLMAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 224
                      66899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.95124175IPR017930Myb domain
SMARTSM007171.1E-13128177IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-27129222IPR009057Homeodomain-like
PfamPF002491.6E-15129174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-25130182IPR009057Homeodomain-like
CDDcd001678.53E-13132173No hitNo description
PROSITE profilePS5129426.426176230IPR017930Myb domain
SMARTSM007173.3E-14180228IPR001005SANT/Myb domain
PfamPF002494.2E-14181223IPR001005SANT/Myb domain
CDDcd001672.78E-11183223No hitNo description
Gene3DG3DSA:1.10.10.605.6E-20183229IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MANKSAAHVF PIYATNADTT SATYSCSSSK PPLCSPSSMR MIFSDMDALS INTPKSSFEY  60
ENGRTSHFSD LLGKKTYTSR NKFEDSHIHI TDLHVGSDQG RVVLHESSSS DGTNIDLNDS  120
CGQSKLCSRG HWRPAEDSKL KDLVALYGPQ NWNLIAEQLE GRSGKSCRLR WFNQLDPRIN  180
RRAFNEEEEE RLMAAHRLYG NKWALIARLF PGRTDNAVKN HWHVIMARKY REQSSAYRRR  240
KMGQTAFSTG SEPLASQPCH NNTNVVNNIR EFGRNLSASS SSYGSPHMAT MSNTPINPPY  300
TAFYSPGHKS TYFYPSQQQC HPPIMMMNSN AVQQSHSNYH KPELEAMAAT PRPAFQDFPI  360
SHHEQCYTSS ASVMEEEDRY RKGNQFEIIN APPFIDFLGV GAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-321292297107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225989.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A175YIS80.0A0A175YIS8_DAUCS; Uncharacterized protein
STRINGSolyc05g007870.1.11e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-72myb domain protein 105