PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_030941

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 651aa MW: 75033.9 Da PI: 4.5281

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_030941	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	40.7	4.6e-13	487	528	6	47
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 +le++sk+F pikdAA + g+++++ Kr+CR GI+ W +R DCAR_030941 487 TLENISKHFGRPIKDAAESFGLSVSTFKRRCRDVGIEWWESR 528 799************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.332	469	553	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-12	487	528	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.51E-16	561	649	No hit	No description
SMART	SM00666	4.2E-11	564	644	IPR000270	PB1 domain
PROSITE profile	PS51745	14.587	564	636	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.3E-13	566	639	No hit	No description
Pfam	PF00564	8.3E-13	567	639	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MGEEIEIRRD VELVNSQGLR HSLVLFWKAS WKEDHYELTI DANRSRMIGC DEEDTTTLLP 60 YQTRFAKSVI SLYDGEEEYP KGVIERVYEN GRPEISPDIK YYSEEEYPHR EFALSCGIRA 120 SFCFPLNFEH GVMEIVSTRN QDVGTLETFC KSLEHLSGFR YNFRDHEDCR NSVLEVVLEA 180 VCQRFDLPLT QYWYDDDDDY NLLRQFGDGN SEVLASWFQF KDVYLHMRFH CLLGYSNESA 240 RAFFCNNISA LSITDYPLAH YARNCGSIAC FTINLFSLLE KEEIKEEEEE GEEKEIEGEE 300 KEIEEKEIEE EIEEEIEAYA LQFFLPSQEM DNEYPQNLLN PIWTIVKESL ANFKLDARER 360 ENLEKVLSVK VINSSSTQTE PASFELGQPQ SSLPHCDGSE LTPTLKMFEK GPAQNSNSNS 420 YEEAAVVETS ILNEASQPRR SEEYFKTKGK TMAPERVDTH VEVSPDEDVE PVTPASKRLK 480 KSKIPCTLEN ISKHFGRPIK DAAESFGLSV STFKRRCRDV GIEWWESRTN HKTDGKSGVK 540 NCSLDTSSLP NRRVVIHSSQ DLNMMSVKIT HEANTIRFEL PSSFEELENI VIKKLHLDRK 600 SFSLKYQDDE DDWVDMTCDE DVRECVKVWG SFKKPTIKMK LGPPINSYPG *

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MGEEIEIRRD VELVNSQGLR HSLVLFWKAS WKEDHYELTI DANRSRMIGC DEEDTTTLLP  60
YQTRFAKSVI SLYDGEEEYP KGVIERVYEN GRPEISPDIK YYSEEEYPHR EFALSCGIRA  120
SFCFPLNFEH GVMEIVSTRN QDVGTLETFC KSLEHLSGFR YNFRDHEDCR NSVLEVVLEA  180
VCQRFDLPLT QYWYDDDDDY NLLRQFGDGN SEVLASWFQF KDVYLHMRFH CLLGYSNESA  240
RAFFCNNISA LSITDYPLAH YARNCGSIAC FTINLFSLLE KEEIKEEEEE GEEKEIEGEE  300
KEIEEKEIEE EIEEEIEAYA LQFFLPSQEM DNEYPQNLLN PIWTIVKESL ANFKLDARER  360
ENLEKVLSVK VINSSSTQTE PASFELGQPQ SSLPHCDGSE LTPTLKMFEK GPAQNSNSNS  420
YEEAAVVETS ILNEASQPRR SEEYFKTKGK TMAPERVDTH VEVSPDEDVE PVTPASKRLK  480
KSKIPCTLEN ISKHFGRPIK DAAESFGLSV STFKRRCRDV GIEWWESRTN HKTDGKSGVK  540
NCSLDTSSLP NRRVVIHSSQ DLNMMSVKIT HEANTIRFEL PSSFEELENI VIKKLHLDRK  600
SFSLKYQDDE DDWVDMTCDE DVRECVKVWG SFKKPTIKMK LGPPINSYPG *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017226976.1	0.0	PREDICTED: protein NLP3-like isoform X3
TrEMBL	A0A175YKJ8	0.0	A0A175YKJ8_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12836	2	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-22	Nin-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_030941