PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030939 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Nin-like | ||||||||
Protein Properties | Length: 205aa MW: 23147.2 Da PI: 5.2071 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 32 | 2.3e-10 | 44 | 85 | 6 | 47 |
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 ++e+++k+F p+kdA k+ g++++++Kr+CR I+ W + DCAR_030939 44 TVENVNKHFGRPLKDATKSFGLSQSIVKRRCRDVDIECWESG 85 6899*********************************99665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 10.467 | 26 | 110 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.2E-8 | 44 | 82 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.64E-19 | 120 | 200 | No hit | No description |
PROSITE profile | PS51745 | 21.745 | 121 | 203 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.4E-18 | 121 | 203 | IPR000270 | PB1 domain |
Pfam | PF00564 | 3.1E-18 | 122 | 199 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.1E-19 | 122 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGAELCYFGG FIVDNLVEVS SDDEDVEPVT PESEQLKKSK IPCTVENVNK HFGRPLKDAT 60 KSFGLSQSIV KRRCRDVDIE CWESGKSQKI DGKSEAKEFS LATSSLPNRR VVTDISHDIN 120 MMTVKVTYNA RTIRFELPSS SGLDELENSV IKRLHLDRKS FSIKYQDDED DWIDITCDED 180 VQECMKVSRS LKKPTIKMKL GPAY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225467.1 | 1e-121 | PREDICTED: protein NLP6-like | ||||
TrEMBL | A0A175YJE0 | 1e-148 | A0A175YJE0_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12836 | 2 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 8e-09 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030939 |