PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_030937

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 619aa MW: 70472.3 Da PI: 5.3571

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_030937	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	40.3	6.1e-13	458	500	6	48
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++e++sk+F pikdAA + g+++++ Kr+CR GI+ W +R DCAR_030937 458 TVENISKHFGRPIKDAAESFGLSVSTFKRRCRDVGIEWWESRT 500 7899***********************************9995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.673	440	524	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-12	458	500	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.6E-17	532	614	No hit	No description
SMART	SM00666	8.0E-16	535	617	IPR000270	PB1 domain
PROSITE profile	PS51745	18.398	535	617	IPR000270	PB1 domain
Pfam	PF00564	1.4E-15	536	612	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.0E-18	536	612	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MGEEIEIHRD VELVKSPGLQ HSLVLFWRVS WKDDHVELTI DANRSGMIGC DEEDETTLLP 60 YQTRFAKSVI SLDGGDMPKG VIERVHKKWS SEMSPDIKYY SEEEYPHRDF ALSCGIRASF 120 CFPFLFSLSI LEIVSTRNQD VGTLETFCKS LEYLSALRYN FRDHELLQDC RNSVLEAVLE 180 AVRQRFDLPL TQYWYNDDYN YNLLHQFGDG NSKVLASWFQ FKDVCLHMCF RCLLGVSNES 240 ARAFFCNNIS ALSIINYPLA HYARNCGPIA CFTIYLFILV EGKNYGSEYV LEFFLPSQEV 300 DNDYPQNLLN SIWTTVKDSV SNCKLAARER EKLEQVLSVK VINSSSTQTE PASFELGQPQ 360 SSLLHYDGSE LTPTLKMFDK GRDQNSNSNS YEEAAAGETS ILNEASQPRR SEEYFKTKGK 420 TMAAERVDNL VEVSSDDEDV EPVTPASKRL KKSKIPCTVE NISKHFGRPI KDAAESFGLS 480 VSTFKRRCRD VGIEWWESRT SQKTDGKSGA KNCSLDTSSL QNRHVVTHSS RVFNMMTVKV 540 TYDAGTIRFE LPSSSGIAEL ENSVIERLHL NRKSFSLKYQ DDEDDWINIT CDKDVQECMK 600 VSRSFNKPTI KMKLGPAY*

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MGEEIEIHRD VELVKSPGLQ HSLVLFWRVS WKDDHVELTI DANRSGMIGC DEEDETTLLP  60
YQTRFAKSVI SLDGGDMPKG VIERVHKKWS SEMSPDIKYY SEEEYPHRDF ALSCGIRASF  120
CFPFLFSLSI LEIVSTRNQD VGTLETFCKS LEYLSALRYN FRDHELLQDC RNSVLEAVLE  180
AVRQRFDLPL TQYWYNDDYN YNLLHQFGDG NSKVLASWFQ FKDVCLHMCF RCLLGVSNES  240
ARAFFCNNIS ALSIINYPLA HYARNCGPIA CFTIYLFILV EGKNYGSEYV LEFFLPSQEV  300
DNDYPQNLLN SIWTTVKDSV SNCKLAARER EKLEQVLSVK VINSSSTQTE PASFELGQPQ  360
SSLLHYDGSE LTPTLKMFDK GRDQNSNSNS YEEAAAGETS ILNEASQPRR SEEYFKTKGK  420
TMAAERVDNL VEVSSDDEDV EPVTPASKRL KKSKIPCTVE NISKHFGRPI KDAAESFGLS  480
VSTFKRRCRD VGIEWWESRT SQKTDGKSGA KNCSLDTSSL QNRHVVTHSS RVFNMMTVKV  540
TYDAGTIRFE LPSSSGIAEL ENSVIERLHL NRKSFSLKYQ DDEDDWINIT CDKDVQECMK  600
VSRSFNKPTI KMKLGPAY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017227208.1	0.0	PREDICTED: protein NLP6-like isoform X1
TrEMBL	A0A175YJQ5	0.0	A0A175YJQ5_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12836	2	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	4e-28	Nin-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_030937