PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Nin-like | ||||||||
Protein Properties | Length: 198aa MW: 22442.4 Da PI: 6.2862 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 38.1 | 3e-12 | 37 | 79 | 6 | 48 |
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++e++sk+F pikdAA + g+++++ Kr+CR I+ W +R DCAR_030936 37 TIENISKHFGRPIKDAADSFGLSVSTFKRRCRDVDIEWWESRT 79 6899***********************************9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 11.558 | 19 | 103 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.1E-12 | 37 | 79 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.09E-16 | 111 | 193 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 4.3E-16 | 113 | 191 | No hit | No description |
SMART | SM00666 | 8.9E-13 | 114 | 194 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 20.763 | 114 | 196 | IPR000270 | PB1 domain |
Pfam | PF00564 | 4.0E-15 | 115 | 191 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAAERVDNPL EVSPDDEDVE PVTPASKRLK KSKIPCTIEN ISKHFGRPIK DAADSFGLSV 60 STFKRRCRDV DIEWWESRTS QKTDGKSGAK HLSSDTFSLP NRRVVTHSSQ DFNMMTIKVT 120 YDARIIKFKL STSSGLEELE NSVIKRLNLD RKSFCLKYQD DADDWIDITC DEDVLECMEV 180 SRSLKKSIIE MKLGPAY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017226029.1 | 1e-142 | PREDICTED: protein NLP7-like | ||||
TrEMBL | A0A175YJ23 | 1e-142 | A0A175YJ23_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12836 | 2 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 1e-09 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030936 |