PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030929 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 331aa MW: 37138.6 Da PI: 6.9915 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.1 | 9.1e-08 | 31 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgr....WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y GV++ + + WvA Ird + l +++t+eeAa a ++a+ +l+g DCAR_030929 31 SRYMGVSRTR-SEYfggpWVAKIRD---------VCLDTYDTEEEAALAFDHAAFRLRG 79 6899998655.4557899****999.........5599*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.83E-18 | 31 | 88 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-11 | 31 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-13 | 32 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-12 | 32 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.539 | 32 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54277 | 1.35E-14 | 241 | 327 | No hit | No description |
PROSITE profile | PS51745 | 18.252 | 242 | 324 | IPR000270 | PB1 domain |
SMART | SM00666 | 9.5E-16 | 242 | 324 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 5.2E-15 | 242 | 322 | No hit | No description |
Pfam | PF00564 | 3.3E-14 | 243 | 323 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDDDYSFMVK ALNQVIGNSG EPTLTSSARN SRYMGVSRTR SEYFGGPWVA KIRDVCLDTY 60 DTEEEAALAF DHAAFRLRGR NAKLNFPNCS SKGELMSPDC PLSTFEKLFK GWSDAKDSGS 120 VSCSGGLGSL QSNKEESDIF QSQGGAHAFQ HYPNVELDWD AIMHQDRVAV ENQVSRSTLK 180 RKCRGLGIKD WRRGKQSIKG NMSSNLRRRS RDDEQAEKNF HSGLPPGEKA PAVDHISQTL 240 NEVTVRAMYN GVTIRFDLSD SSGIAELENN VIERLHLERE SFSIKYQDDE VIWILIACDK 300 DVRKCIEISR SLKRTSITLL VDPPINHHKQ * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225466.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor ERF057-like | ||||
TrEMBL | A0A175YJD1 | 0.0 | A0A175YJD1_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12836 | 2 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 1e-17 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030929 |