PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030927 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Nin-like | ||||||||
Protein Properties | Length: 672aa MW: 76541.5 Da PI: 5.213 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 48.2 | 2.1e-15 | 490 | 533 | 2 | 45 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWP 45 +++++le++sk+F p++dAAk+ gv+ ++ KriCR +GIkRW DCAR_030927 490 KEDMNLENVSKHFGRPLNDAAKSFGVSRSTFKRICRGLGIKRWQ 533 57899**************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.450.40 | 6.6E-6 | 70 | 142 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 11.729 | 475 | 561 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.2E-14 | 493 | 532 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.08E-18 | 581 | 665 | No hit | No description |
SMART | SM00666 | 6.2E-22 | 583 | 665 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 21.681 | 583 | 665 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.8E-17 | 584 | 660 | No hit | No description |
Pfam | PF00564 | 3.8E-17 | 584 | 664 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MVIGFIIRDR DKECSNYARL RKPEYVSKSL IQMWVLSYKT NEEGEDYCEL STQNEPFYIV 60 SDDDDGGLAS YRMHSVAHTI MPDEVNEVEG QKQEGVISRV FKNQRPEMSP DISCYSLQEY 120 PHRDFALSCG IRSSLCVPIY QDIFSYESPG GVLEFVSTST DQLKSFRNYC RYYEAFVFRG 180 TKMNLMIDQL YCDPRRHYLR RNVEMDHLLT VVCQKYPLPL AQYWEVGDVN VRDLGVVNQE 240 GNIDFPNVTP WLQFKNACKN IGLYIDEGLV GKSYLSHKSF LCRDIKELSI TNYPLAHYAP 300 NCRPIPCFTI CLCSFKPWYR EYVLELFLPS QEMDSYDPRT LLNSLMETMK EHLPDYMVAS 360 GEQLGQVLSV EVIKSSTHDK PEYLKIGEPQ SSLPPQEGLN NEGDASHQFP FVLPSLFKDG 420 AVQDGNVMNI EESNSTINSY EEIASGETST SRPNIVPETI HADESVQESP LENIAYALTN 480 EDVNYALNNK EDMNLENVSK HFGRPLNDAA KSFGVSRSTF KRICRGLGIK RWQSGKRRMK 540 GNFSSRLGKG INQEQPGRRN FGSTSMAAVN ETVVAHSSQD LNKMTVKATY KDVTIRFKLP 600 DLSGIAELEN NVIERLHLGR NNFTIKYQDE EGDLVLIACD KDVRECIEIS RSLKETTIKL 660 LLDPPLNRNA L* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017226093.1 | 0.0 | PREDICTED: protein NLP7-like isoform X1 | ||||
TrEMBL | A0A175YJP1 | 0.0 | A0A175YJP1_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12836 | 2 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 2e-41 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030927 |