PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030925
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 296aa    MW: 33115.2 Da    PI: 6.8729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030925genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.5e-0913441555
          AP2 15 WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 WvA Ird         ++lg+++t+eeAa a ++a+ +l+g
  DCAR_030925 13 WVAKIRD---------VYLGTYDTEEEAALAFDHAAFRLRG 44
                 ****888.........8**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.893152IPR001471AP2/ERF domain
SMARTSM003809.8E-121058IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-131153IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-101152IPR016177DNA-binding domain
CDDcd000181.57E-171153No hitNo description
SuperFamilySSF542771.46E-15206292No hitNo description
Gene3DG3DSA:3.10.20.2407.2E-16207287No hitNo description
SMARTSM006662.0E-16207289IPR000270PB1 domain
PROSITE profilePS5174519.462207289IPR000270PB1 domain
PfamPF005641.0E-14208288IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSVSRSEFYG GPWVAKIRDV YLGTYDTEEE AALAFDHAAF RLRGRNAKLN LPNCSSKGEL  60
MSPDRPLSTF EKLFKGWSDA KDSGSVSCSG GLGSLQSNKE ESDIFQSQGG AHAFQHYPNV  120
ELDWDAIMHQ DRVAVENQVS RSTLKRKCRG LGIKDWRRGK QSIKGNMSSN LRRILSDDEQ  180
AGKNFYSGLP PGEKAPAVDQ ISQTLNEVTV RAMYNGVTIR FDLSDSSGIA ELENNVIERL  240
HLDRESFSIK YQDDEDIWIL IACDKDVRKC IEISRSLKKT SITLLVDPPI NHHKQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224724.13e-94PREDICTED: protein NLP7-like
TrEMBLA0A175YI360.0A0A175YI36_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12836219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.14e-19NIN like protein 7